Browse Element(s) Details


OsAffx.32078.1.S1_at

Description tigr:9640.m03709
TID=OsAffx.32078.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=retroelement, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3816011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38110Os.3382.1.S1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.47880.1.A1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.22820.1.A1_at5/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.56154.1.S1_s_at4/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38120Os.52605.1.S1_at11/1112+23376512..23377537Thaumatin family protein, expressed
LOC_Os12g38130NANA12+23384971..23385219hypothetical protein
LOC_Os12g38140Os.11513.1.S1_at11/1112+23386517..23387326expressed protein
LOC_Os12g38150Os.6116.1.S1_x_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38150Os.6116.1.S1_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38160OsAffx.32078.1.S1_at11/1112+23396535..23397786hypothetical protein
LOC_Os12g38170Os.17108.1.S1_at11/1112+23401918..23403053Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os12g38180Os.50671.1.S1_x_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S2_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S1_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38190OsAffx.32079.1.S1_x_at11/1112+23418670..23420572hypothetical protein
LOC_Os12g38190OsAffx.16036.1.S1_x_at1/1112+23418670..23420572hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32078.1.S1_at--730--9611Chr12:23397159..23397183 (25 bp)
TCATCTGTTCTTTCATTGCTCATTT
LOC_Os12g38160
OsAffx.32078.1.S1_at--671--7151Chr12:23397130..23397154 (25 bp)
GTCTTTCCTGGATGATCTCTGATTT
LOC_Os12g38160
OsAffx.32078.1.S1_at--1105--10311Chr12:23397055..23397079 (25 bp)
TTTCTTTCATTCTAGCAGCTTCTTC
LOC_Os12g38160
OsAffx.32078.1.S1_at--1046--8071Chr12:23396943..23396967 (25 bp)
GGAGCCTTCTCAAGTTTGCATTGCA
LOC_Os12g38160
OsAffx.32078.1.S1_at--115--5071Chr12:23396921..23396945 (25 bp)
GCAGCTGATGTTATGGCTTCAAACT
LOC_Os12g38160
OsAffx.32078.1.S1_at--22--8611Chr12:23396763..23396787 (25 bp)
TGGTCTGTTTCTTCATGACCCAACA
LOC_Os12g38160
OsAffx.32078.1.S1_at--747--1811Chr12:23396746..23396770 (25 bp)
ACCCAACATCTCACAAGGCTTTATT
LOC_Os12g38160
OsAffx.32078.1.S1_at--421--2951Chr12:23396717..23396741 (25 bp)
AAGGCCAGTTCTGACACTTATACTT
LOC_Os12g38160
OsAffx.32078.1.S1_at--278--4871Chr12:23396672..23396696 (25 bp)
GCTAGTATTTATGTTGCGCTCTGCA
LOC_Os12g38160
OsAffx.32078.1.S1_at--503--10711Chr12:23396659..23396683 (25 bp)
TTGCGCTCTGCATTTGTCAAAAACT
LOC_Os12g38160
OsAffx.32078.1.S1_at--974--2131Chr12:23396627..23396651 (25 bp)
ACAGATGTGGTCTTTCTTTCGGACA
LOC_Os12g38160
Target Sequence 
TCATCTGTTCTTTCATTGCTCATTTGCCCGTCTTTCCTGGATGATCTCTGATTTCAAGTTGAATTTCCAAATCATTGATA
GTATGAATTCAGTTCCAGAGATTATTTCTTTCATTCTAGCAGCTTCTTCTAAAACTGAAAGCTTTCAAAAATTTTGTATT
TTTCTCTGGTTTATCTGGAAAGCTAGAAATGGTTCCTACTTCAAAAGAAAAAACTGGGAGCCTTCTCAAGTTTGCATTGC
AGCTGATGTTATGGCTTCAAACTATAACACCTTAACACAAGCTCAAAATCAGGATGATAATTCTCTCTTTTTTAATTCTC
CTGATTCAAATATCTCCATTCCTTCTGGAACAAGATGTTTTGTTGATGCTTCATGGAAGGATGATAAGTCAGGTTTTGGT
CTGTTTCTTCATGACCCAACATCTCACAAGGCTTTATTTGTAAAGGCCAGTTCTGACACTTATACTTCAGCTTTGCAAGC
AGAACATGCTAGTATTTATGTTGCGCTCTGCATTTGTCAAAAACTTAAGATCACAGATGTGGTCTTTCTTTCGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis