Browse Element(s) Details


Os.47880.1.A1_at

Description gb:AK111292.1
DB_XREF= gi:32996501
TID=Os.47880.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-A06, full insert sequence.
FL= gb:AK111292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3811011/11Importin-beta N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38040Os.54670.1.S1_at10/1112+23342823..23345765Zinc knuckle family protein, expressed
LOC_Os12g38040Os.9279.1.S1_at1/1112+23342823..23345765Zinc knuckle family protein, expressed
LOC_Os12g38064Os.37783.2.S1_x_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.7826.1.S1_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064Os.37783.1.S1_a_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.13220.1.S1_at1/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.4897.1.A1_at1/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38090OsAffx.7828.1.S1_at11/1112+23360442..23361839F-box domain containing protein
LOC_Os12g38100OsAffx.7829.1.S1_at11/1112+23365498..23366323expressed protein
LOC_Os12g38110Os.3382.1.S1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.47880.1.A1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.22820.1.A1_at5/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.56154.1.S1_s_at4/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38120Os.52605.1.S1_at11/1112+23376512..23377537Thaumatin family protein, expressed
LOC_Os12g38130NANA12+23384971..23385219hypothetical protein
LOC_Os12g38140Os.11513.1.S1_at11/1112+23386517..23387326expressed protein
LOC_Os12g38150Os.6116.1.S1_x_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38150Os.6116.1.S1_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38160OsAffx.32078.1.S1_at11/1112+23396535..23397786hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0030089cellular_componentphycobilisome
GO:0008565molecular_functionprotein transporter activity
GO:0016829molecular_functionlyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47880.1.A1_at--26--10751Chr12:23374669..23374693 (25 bp)
TTGCACTGCCACTGCGGGATGCGTA
LOC_Os12g38110
Os.47880.1.A1_at--1122--7971Chr12:23374685..23374709 (25 bp)
GGATGCGTATTATTTGGCTGCCACA
LOC_Os12g38110
Os.47880.1.A1_at--507--8331Chr12:23374700..23374724 (25 bp)
GGCTGCCACATGCAAGTTCAGACTT
LOC_Os12g38110
Os.47880.1.A1_at--675--6751Chr12:23374715..23374739 (25 bp)
GTTCAGACTTCTTGATTCCACTGCG
LOC_Os12g38110
Os.47880.1.A1_at--325--71Chr12:23374729..23374753 (25 bp)
ATTCCACTGCGGTCAGATTCGGTAA
LOC_Os12g38110
Os.47880.1.A1_at--366--2991Chr12:23374802..23374826 (25 bp)
AATGTCAGTGATCGGAGCCATCCCT
LOC_Os12g38110
Os.47880.1.A1_at--820--9051Chr12:23374843..23374867 (25 bp)
TGCATTAGTGATCGGAGCCATCCCT
LOC_Os12g38110
Os.47880.1.A1_at--372--6871Chr12:23374885..23374909 (25 bp)
GTATTATGGGCCGTTCTGGATTGAA
LOC_Os12g38110
Os.47880.1.A1_at--702--8551Chr12:23374901..23374925 (25 bp)
TGGATTGAAGCCTAAACGTGCCCTA
LOC_Os12g38110
Os.47880.1.A1_at--663--10071Chr12:23374951..23374975 (25 bp)
TAGGCACGGTTGTTTAGTTTGAAGC
LOC_Os12g38110
Os.47880.1.A1_at--320--211Chr12:23375097..23375121 (25 bp)
ATTTGCTCAGGTTTTGGCACTACCA
LOC_Os12g38110
Target Sequence 
TTGCACTGCCACTGCGGGATGCGTATTATTTGGCTGCCACATGCAAGTTCAGACTTCTTGATTCCACTGCGGTCAGATTC
GGTAAGTTTTCAAGAGGAAGTTATCTGAAGCTAAACCGATTTGAACATCTACAAATGTCAGTGATCGGAGCCATCCCTCT
CTACAAAGGTATAATGCATTAGTGATCGGAGCCATCCCTCTCTACATAGATATAATGTATTATGGGCCGTTCTGGATTGA
AGCCTAAACGTGCCCTACCAATATTTTTGATAGCTTGAAGAGTAGGCACGGTTGTTTAGTTTGAAGCCAAATAATTAACA
TTGCCAATGTTCAATTTGGCAATTTCTAAATTCTAATCAAAGTTTTGGCTTCTAATTTGTATGAAACCAAATACAACTTT
ACCCTACCAAAGAAATGTTAGTGCTAAAATTTGCTCAGGTTTTGGCACTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47880.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis