Browse Element(s) Details


OsAffx.7826.1.S1_at

Description tigr:9640.m03698
TID=OsAffx.7826.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Metallothionein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3806411/11Metallothionein-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38020OsAffx.22641.1.S1_at8/1112+23321375..23326043retrotransposon protein, putative, unclassified
LOC_Os12g38030OsAffx.22848.4.S1_at2/1112+23332989..23338947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38030OsAffx.22848.4.S1_x_at1/1112+23332989..23338947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38040Os.54670.1.S1_at10/1112+23342823..23345765Zinc knuckle family protein, expressed
LOC_Os12g38040Os.9279.1.S1_at1/1112+23342823..23345765Zinc knuckle family protein, expressed
LOC_Os12g38064Os.37783.2.S1_x_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.7826.1.S1_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064Os.37783.1.S1_a_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.13220.1.S1_at1/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.4897.1.A1_at1/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38090OsAffx.7828.1.S1_at11/1112+23360442..23361839F-box domain containing protein
LOC_Os12g38100OsAffx.7829.1.S1_at11/1112+23365498..23366323expressed protein
LOC_Os12g38110Os.3382.1.S1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.47880.1.A1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.22820.1.A1_at5/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.56154.1.S1_s_at4/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38120Os.52605.1.S1_at11/1112+23376512..23377537Thaumatin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7826.1.S1_at--1047--2891Chr12:23349900..23349924 (25 bp)
AAGGTTATCATGCTGATGATCTGTA
LOC_Os12g38064
OsAffx.7826.1.S1_at--424--10251Chr12:23349856..23349880 (25 bp)
TTTGGTGTGCAATGGCTCCAGTGTG
LOC_Os12g38064
OsAffx.7826.1.S1_at--667--10851Chr12:23349855..23349879 (25 bp)
TTGGTGTGCAATGGCTCCAGTGTGT
LOC_Os12g38064
OsAffx.7826.1.S1_at--892--3611Chr12:23349782..23349806 (25 bp)
CTTGTGAGGTGTCCCCTTTGTGTTC
LOC_Os12g38064
OsAffx.7826.1.S1_at--272--7391Chr12:23349779..23349803 (25 bp)
GTGAGGTGTCCCCTTTGTGTTCTTG
LOC_Os12g38064
OsAffx.7826.1.S1_at--650--1051Chr12:23349776..23349800 (25 bp)
AGGTGTCCCCTTTGTGTTCTTGTCT
LOC_Os12g38064
OsAffx.7826.1.S1_at--650--8711Chr12:23349773..23349797 (25 bp)
TGTCCCCTTTGTGTTCTTGTCTGAA
LOC_Os12g38064
OsAffx.7826.1.S1_at--85--7251Chr12:23349772..23349796 (25 bp)
GTCCCCTTTGTGTTCTTGTCTGAAT
LOC_Os12g38064
OsAffx.7826.1.S1_at--967--6731Chr12:23349761..23349785 (25 bp)
GTTCTTGTCTGAATCTTAGATGCTA
LOC_Os12g38064
OsAffx.7826.1.S1_at--13--451Chr12:23349749..23349773 (25 bp)
ATCTTAGATGCTATGATATGGCCAT
LOC_Os12g38064
OsAffx.7826.1.S1_at--967--6331Chr12:23349743..23349767 (25 bp)
GATGCTATGATATGGCCATTTGTGA
LOC_Os12g38064
Target Sequence 
AAGGTTATCATGCTGATGATCTGTACAAGTAAATAAAGAAGCCATTTGGTGTGCAATGGCTCCAGTGTGTGTGAGTCAGC
TTGTTGTTCATCCTGATGTACTAATGTGGACTGTGAATCTTGTGAGGTGTCCCCTTTGTGTTCTTGTCTGAATCTTAGAT
GCTATGATATGGCCATTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis