Browse Element(s) Details


OsAffx.7829.1.S1_at

Description tigr:9640.m03703
TID=OsAffx.7829.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3810011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38040Os.54670.1.S1_at10/1112+23342823..23345765Zinc knuckle family protein, expressed
LOC_Os12g38040Os.9279.1.S1_at1/1112+23342823..23345765Zinc knuckle family protein, expressed
LOC_Os12g38064Os.37783.2.S1_x_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.7826.1.S1_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064Os.37783.1.S1_a_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.13220.1.S1_at1/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.4897.1.A1_at1/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38090OsAffx.7828.1.S1_at11/1112+23360442..23361839F-box domain containing protein
LOC_Os12g38100OsAffx.7829.1.S1_at11/1112+23365498..23366323expressed protein
LOC_Os12g38110Os.3382.1.S1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.47880.1.A1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.22820.1.A1_at5/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.56154.1.S1_s_at4/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38120Os.52605.1.S1_at11/1112+23376512..23377537Thaumatin family protein, expressed
LOC_Os12g38130NANA12+23384971..23385219hypothetical protein
LOC_Os12g38140Os.11513.1.S1_at11/1112+23386517..23387326expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7829.1.S1_at--79--10531Chr12:23365675..23365699 (25 bp)
TTCAGGTTCCTGCTCGCTGCGAACG
LOC_Os12g38100
OsAffx.7829.1.S1_at--158--3551Chr12:23365701..23365725 (25 bp)
CATCGTGGCGGTTTACTCGGCGTTC
LOC_Os12g38100
OsAffx.7829.1.S1_at--975--9031Chr12:23365784..23365808 (25 bp)
TGCAGCTCTGGTTCGACTTCGGCCA
LOC_Os12g38100
OsAffx.7829.1.S1_at--363--9351Chr12:23365796..23365816 (21 bp)
TCGACTTCGGCCACGACCAAGGGTT
LOC_Os12g38100
OsAffx.7829.1.S1_at--242--4371Chr12:23365806..23365949 (25 bp)
CCACGACCAAGGGTTCGGGTACATG
LOC_Os12g38100
OsAffx.7829.1.S1_at--762--1951Chr12:23366161..23366185 (25 bp)
ACTGACCAATTCAGTGTACTCCGGT
LOC_Os12g38100
OsAffx.7829.1.S1_at--1137--3351Chr12:23366198..23366222 (25 bp)
CACCTCTCGGGCATGAAAATCTGCA
LOC_Os12g38100
OsAffx.7829.1.S1_at--275--2451Chr12:23366213..23366237 (25 bp)
AAAATCTGCAGTGTCATGCTCGCCT
LOC_Os12g38100
OsAffx.7829.1.S1_at--1070--9091Chr12:23366229..23366253 (25 bp)
TGCTCGCCTCGAGCTAGCTAAGCTA
LOC_Os12g38100
OsAffx.7829.1.S1_at--352--3731Chr12:23366246..23366270 (25 bp)
CTAAGCTAGCTTGGACCTTGGATAG
LOC_Os12g38100
OsAffx.7829.1.S1_at--373--7931Chr12:23366265..23366289 (25 bp)
GGATAGCTCTAGCTGCTTAATTAAT
LOC_Os12g38100
Target Sequence 
TTCAGGTTCCTGCTCGCTGCGAACGCCATCGTGGCGGTTTACTCGGCGTTCGAGGTCGCCGCGGCGGCGTGGGAGGTGGC
CGGCGGCGCCACGCTCCTTCCCGAGGCCATGCAGCTCTGGTTCGACTTCGGCCACGACCAAGGGTTCGGGTACATGGCGC
TGGCGGCTGCGGCGGCGGCGGCGCGGGAGGCGGCGACGTGCGGATCACACGGCGGCGGCACGGCGTGCGTGCAGGGGGAC
ATCGCGGTGGGGCTCGGGTTCGCGGGGTTCGCGGCGGTGGCGGCGGCGGCGGCGGCGTCGGGGTACCGCCTCGCCTGCTT
CCTCGCCACCGGCTCGCGCTCGCCGGCCTCACCGTCCTCCTCCCCCTACTGACCAATTCAGTGTACTCCGGTCGCCGGAA
CAAACACCTCTCGGGCATGAAAATCTGCAGTGTCATGCTCGCCTCGAGCTAGCTAAGCTAGCTTGGACCTTGGATAGCTC
TAGCTGCTTAATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis