Browse Element(s) Details


Os.6980.1.S1_at

Description gb:AK105835.1
DB_XREF= gi:32991044
TID=Os.6980.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E11, full insert sequence.
FL= gb:AK105835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3821011/11Spotted leaf protein 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38180Os.50671.1.S1_x_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S2_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S1_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38190OsAffx.32079.1.S1_x_at11/1112+23418670..23420572hypothetical protein
LOC_Os12g38190OsAffx.16036.1.S1_x_at1/1112+23418670..23420572hypothetical protein
LOC_Os12g38200OsAffx.20006.1.S1_at11/1112+23425400..23426830Dof domain, zinc finger family protein, expressed
LOC_Os12g38210Os.6980.1.S1_at11/1112+23434652..23439842Spotted leaf protein 11, putative, expressed
LOC_Os12g38210OsAffx.8265.1.A1_at1/1112+23434652..23439842Spotted leaf protein 11, putative, expressed
LOC_Os12g38220NANA12+23449664..23449939hypothetical protein
LOC_Os12g38230Os.55662.1.S1_at11/1112+23451269..23452144expressed protein
LOC_Os12g38240NANA12+23456530..23457593transposon protein, putative, unclassified
LOC_Os12g38250OsAffx.7830.1.S1_at11/1112+23458352..23459049expressed protein
LOC_Os12g38260Os.53836.1.S1_at11/1112+23460907..23465702expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6980.1.S1_at--720--8971Chr12:23435115..23435139 (25 bp)
TGAACAATTGGACAGCCCAGCGTCT
LOC_Os12g38210
Os.6980.1.S1_at--213--1631Chr12:23435097..23435121 (25 bp)
AGCGTCTCAATACCCTATGGTTGTA
LOC_Os12g38210
Os.6980.1.S1_at--1044--6091Chr12:23435055..23435079 (25 bp)
GAGTCATCGTCGCAATCCTATCAAA
LOC_Os12g38210
Os.6980.1.S1_at--1018--6591Chr12:23435025..23435049 (25 bp)
GATTGAGTAGCATCCTGGTCACTTT
LOC_Os12g38210
Os.6980.1.S1_at--820--8591Chr12:23435010..23435034 (25 bp)
TGGTCACTTTGCATTCTGCTCATGA
LOC_Os12g38210
Os.6980.1.S1_at--750--8271Chr12:23434980..23435004 (25 bp)
GGCATGCCGACCAATTGAGGTTTTT
LOC_Os12g38210
Os.6980.1.S1_at--321--6151Chr12:23434964..23434988 (25 bp)
GAGGTTTTTCCACAAGCTTGAACTA
LOC_Os12g38210
Os.6980.1.S1_at--576--3691Chr12:23434942..23434966 (25 bp)
CTATAAGGTTTCCATGCTTGTGTGC
LOC_Os12g38210
Os.6980.1.S1_at--669--10811Chr12:23434925..23434949 (25 bp)
TTGTGTGCTGAAACTCCCAGGTTGT
LOC_Os12g38210
Os.6980.1.S1_at--390--1211Chr12:23434856..23434880 (25 bp)
AGTTTCTTAAACATGCAGCTGCTAT
LOC_Os12g38210
Os.6980.1.S1_at--979--651Chr12:23434817..23434841 (25 bp)
ATGCAAGGTTTTCCCATGTATATCC
LOC_Os12g38210
Target Sequence 
TGAACAATTGGACAGCCCAGCGTCTCAATACCCTATGGTTGTATGAACTCGATGATGAGCGAGTCATCGTCGCAATCCTA
TCAAATGTCGGATTGAGTAGCATCCTGGTCACTTTGCATTCTGCTCATGATTCATGGCATGCCGACCAATTGAGGTTTTT
CCACAAGCTTGAACTATAAGGTTTCCATGCTTGTGTGCTGAAACTCCCAGGTTGTGAGAATTTGTTTAGGCAGCCCAGGA
TGTTGAGATAGATGTGTACAGTTTCTTAAACATGCAGCTGCTATATGTAGACAACATAATGCAAGGTTTTCCCATGTATA
TCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis