Browse Element(s) Details


Os.55662.1.S1_at

Description gb:AK108513.1
DB_XREF= gi:32993722
TID=Os.55662.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55662 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-A07, full insert sequence.
FL= gb:AK108513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3823011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38200OsAffx.20006.1.S1_at11/1112+23425400..23426830Dof domain, zinc finger family protein, expressed
LOC_Os12g38210Os.6980.1.S1_at11/1112+23434652..23439842Spotted leaf protein 11, putative, expressed
LOC_Os12g38210OsAffx.8265.1.A1_at1/1112+23434652..23439842Spotted leaf protein 11, putative, expressed
LOC_Os12g38220NANA12+23449664..23449939hypothetical protein
LOC_Os12g38230Os.55662.1.S1_at11/1112+23451269..23452144expressed protein
LOC_Os12g38240NANA12+23456530..23457593transposon protein, putative, unclassified
LOC_Os12g38250OsAffx.7830.1.S1_at11/1112+23458352..23459049expressed protein
LOC_Os12g38260Os.53836.1.S1_at11/1112+23460907..23465702expressed protein
LOC_Os12g38270Os.9279.1.S1_at11/1112+23467876..23468826Metallothionein-like protein 1, putative, expressed
LOC_Os12g38280Os.27639.1.S1_x_at3/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38280Os.53731.1.S1_at2/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55662.1.S1_at--624--5391Chr12:23451841..23451865 (25 bp)
GAAGCTTCTGCCTCTGTAGACCTCA
LOC_Os12g38230
Os.55662.1.S1_at--311--5351Chr12:23451691..23451715 (25 bp)
GAAGACGGGTACGTGACACCGACGT
LOC_Os12g38230
Os.55662.1.S1_at--696--10751Chr12:23451576..23451600 (25 bp)
TTGAGGGAGCTCTCGTGATGGCGGC
LOC_Os12g38230
Os.55662.1.S1_at--518--7891Chr12:23451524..23451548 (25 bp)
GGTTCAGGCGAACCCCGACTCCGAG
LOC_Os12g38230
Os.55662.1.S1_at--180--7211Chr12:23451490..23451514 (25 bp)
GTCGTCGTCGCGTTCATTCGCAGCC
LOC_Os12g38230
Os.55662.1.S1_at--621--4631Chr12:23451481..23451505 (25 bp)
GCGTTCATTCGCAGCCTGCGGCAGC
LOC_Os12g38230
Os.55662.1.S1_at--960--5351Chr12:23451434..23451458 (25 bp)
GAAGAAGAACCCCATGTAGACTTTT
LOC_Os12g38230
Os.55662.1.S1_at--323--211Chr12:23451304..23451328 (25 bp)
ATTTGAAACTGTTGGCGGGATGCCC
LOC_Os12g38230
Os.55662.1.S1_at--356--2551Chr12:23451298..23451322 (25 bp)
AACTGTTGGCGGGATGCCCATCCTA
LOC_Os12g38230
Os.55662.1.S1_at--694--6351Chr12:23451286..23451310 (25 bp)
GATGCCCATCCTAGCTGGGACCCAG
LOC_Os12g38230
Os.55662.1.S1_at--47--8651Chr12:23451271..23451295 (25 bp)
TGGGACCCAGCTAGACCTGAAATTT
LOC_Os12g38230
Target Sequence 
GAAGCTTCTGCCTCTGTAGACCTCACCGGCGAGAGGGGACGACGCCGCGATGATGAAGCGCCCACCACGGCGGCGGCGGT
GGCGGAGGAGGAAGCTTCTGCCCCGCCGGCCGTCGTCGTCGCCGGCGCCGGCGACGGCGACGACGACGACGAAGACGGGT
ACGTGACACCGACGTCGCCGCGCCAACGGCTGCAGCCGCCGACGGTGTGCCCGCCGGCGCCGAAGGCGGCGCGTTCGGCG
CCAACGCGGCTGCCTGCGAGGAGGTTTGAGGGAGCTCTCGTGATGGCGGCGTCGGCGTCGCCGCCGGGGCGGAAGAGGGT
TCAGGCGAACCCCGACTCCGAGTCCGACGAGGTCGTCGTCGCGTTCATTCGCAGCCTGCGGCAGCGGCTGCTTCCACCGG
AGGACGAGAAGAAGAACCCCATGTAGACTTTTTAAAAATATTTTGGTTTGGTTTGATTAAAGGTAGATTGGTTTTTTTTT
AAAAAAATGAATTTAGTTTATCTGAATTTCAATTTTTTTGGGGCTAAATTCAGATAAATTTGAAACTGTTGGCGGGATGC
CCATCCTAGCTGGGACCCAGCTAGACCTGAAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis