Browse Element(s) Details


Os.17004.1.S1_at

Description gb:AK106708.1
DB_XREF= gi:32991917
TID=Os.17004.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-F01, full insert sequence.
FL= gb:AK106708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g257308/11hypothetical protein
LOC_Os12g382901/11Metallothionein-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25700OsAffx.16409.1.S1_s_at11/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25700OsAffx.16409.1.S1_at8/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25710Os.28062.1.S1_a_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25710Os.28062.2.S2_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25720OsAffx.16410.1.S1_at10/117+14759958..14762813hypothetical protein
LOC_Os07g25720Os.49832.1.S1_at2/117+14759958..14762813hypothetical protein
LOC_Os07g25730Os.17004.1.S1_at8/117+14764615..14765215hypothetical protein
LOC_Os07g25740OsAffx.5439.1.S1_x_at11/117+14772929..14777334KH domain containing protein, expressed
LOC_Os07g25740Os.57022.1.S1_at11/117+14772929..14777334KH domain containing protein, expressed
LOC_Os07g25740OsAffx.5439.1.S1_at11/117+14772929..14777334KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17004.1.S1_at--836--8671Chr07:14764750..14764774 (25 bp)
TGTGTTAATTCCCTTTGCTTCAAAG
LOC_Os07g25730
Os.17004.1.S1_at--978--10311Chr07:14765026..14765050 (25 bp)
TTTCTAGGCCTGAATTTGTCTGCTT
LOC_Os07g25730
Os.17004.1.S1_at--64--8491Chr07:14765084..14765108 (25 bp)
TGGCTGCTGGCTCCTATGATGTTGC
LOC_Os07g25730
Os.17004.1.S1_at--623--711Chr07:14765099..14765123 (25 bp)
ATGATGTTGCCCATGTCTCCTGCTA
LOC_Os07g25730
Os.17004.1.S1_at--383--7171Chr07:14765113..14765137 (25 bp)
GTCTCCTGCTACAAGTGCAACCGGT
LOC_Os07g25730
Os.17004.1.S1_at--970--5151Chr07:14765129..14765153 (25 bp)
GCAACCGGTGCAACTGCTAATGTTA
LOC_Os07g25730
Os.17004.1.S1_at--1032--10191Chr07:14765160..14765184 (25 bp)
TATTGACTGTAGCAAGCACCAACGT
LOC_Os07g25730
Os.17004.1.S1_at--1053--5071Chr07:14765175..14765199 (25 bp)
GCACCAACGTGCCTATCTGGGATGA
LOC_Os07g25730
Os.17004.1.S1_at--897--2791Chr07:14765216..14765240 (25 bp)
AAGAGGCCATCCAGTGTGACGGTTC
NONE
Os.17004.1.S1_at--572--7371Chr07:14765231..14765255 (25 bp)
GTGACGGTTCAATCTCTGTATATTT
NONE
Os.17004.1.S1_at--657--432Chr12:23479808..23479832 (25 bp)
ATCTTGCCAGTGTGCCCTGTGTAAT
LOC_Os12g38290
Target Sequence 
TGTGTTAATTCCCTTTGCTTCAAAGTTTCTTCANANANANCTGCATGAAGNATGAAAANACATTTTANTCAGTACTATCG
GTTACTNNACATTTATTTATGCCATGCTTTTTTTATTGGTTCAGGAAGATGTACACAGTACACTGATCTGGTGGAGAAGA
ACACCACAACCACCTCAGCTAACANGTTCCTTTGTTGCACCTGAAAAGGGATAATTCGCATATATTTCATCTTAAAAAGA
AACTGAGCTGAAGAAACTTATGAATCAGATAACATTTTTTCTAGGCCTGAATTTGTCTGCTTNNTTTTGCAGGCACGGCG
AAGCAGCGTTNGAGGTGGCTGCTGGCTCCTATGATGTTGCCCATGTCTCCTGCTACAAGTGCAACCGGTGCAACTGCTAA
TGTTAAGAGATTATTGACTGTAGCAAGCACCAACGTGCCTATCTGGGATGAAGTGATGAATAAATAAAAGAGGCCATCCA
GTGTGACGGTTCAATCTCTGTATATTTGGCTGTTGATAATTACTGGTCATCTTGCCAGTGTGCCCTGTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis