Browse Element(s) Details


OsAffx.16409.1.S1_s_at

Description tigr:9635.m02464
TID=OsAffx.16409.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2570011/11TLD family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25670NANA7+14717663..14718388hypothetical protein
LOC_Os07g25680Os.53343.1.S1_x_at11/117+14721415..14729559Protein kinase domain containing protein, expressed
LOC_Os07g25680OsAffx.28586.1.S1_at11/117+14721415..14729559Protein kinase domain containing protein, expressed
LOC_Os07g25690Os.16456.1.S1_at11/117+14731541..14733207Al-induced protein, putative, expressed
LOC_Os07g25690OsAffx.5438.1.S1_at8/117+14731541..14733207Al-induced protein, putative, expressed
LOC_Os07g25700OsAffx.16409.1.S1_s_at11/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25700OsAffx.16409.1.S1_at8/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25710Os.28062.1.S1_a_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25710Os.28062.2.S2_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25720OsAffx.16410.1.S1_at10/117+14759958..14762813hypothetical protein
LOC_Os07g25720Os.49832.1.S1_at2/117+14759958..14762813hypothetical protein
LOC_Os07g25730Os.17004.1.S1_at8/117+14764615..14765215hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16409.1.S1_s_at--1119--511Chr07:14741377..14741401 (25 bp)
ATCGCTAAGAACACTTTTCCGTAGG
LOC_Os07g25700
OsAffx.16409.1.S1_s_at--370--1091Chr07:14741402..14741426 (25 bp)
AGTGAAAATCTCCAGGGTCCATGCC
LOC_Os07g25700
OsAffx.16409.1.S1_s_at--497--9231Chr07:14741412..14741550 (25 bp)
TCCAGGGTCCATGCCTATTGATTGT
LOC_Os07g25700
OsAffx.16409.1.S1_s_at--125--8351Chr07:14741566..14741590 (25 bp)
GGCTGTGTTTGGTGGCTTGTTAAAT
LOC_Os07g25700
OsAffx.16409.1.S1_s_at--634--7531Chr07:14741577..14741601 (25 bp)
GTGGCTTGTTAAATGGTCCTCTCAG
LOC_Os07g25700
OsAffx.16409.1.S1_s_at--806--2971Chr07:14741588..14741612 (25 bp)
AATGGTCCTCTCAGGCCTACAGAGA
LOC_Os07g25700
OsAffx.16409.1.S1_s_at--467--811Chr07:14741929..14741953 (25 bp)
ATGGTGAACCTAGGCTTTTCAGACC
LOC_Os07g25700
OsAffx.16409.1.S1_s_at--648--7791Chr07:14742557..14742581 (25 bp)
GGTGCCAACAGGTACTACTACTTAT
LOC_Os07g25700
OsAffx.16409.1.S1_s_at--179--7831Chr07:14742567..14742591 (25 bp)
GGTACTACTACTTATGCTTGAATGA
LOC_Os07g25700
OsAffx.16409.1.S1_s_at--873--6071Chr07:14742616..14742640 (25 bp)
GAGTTTCGCGTTGTGCCTCGATGAA
LOC_Os07g25700
OsAffx.16409.1.S1_s_at--781--7691Chr07:14744098..14744122 (25 bp)
GGGTCGTTCAACATAGTTGGCCTTG
LOC_Os07g25700
Target Sequence 
ATCGCTAAGAACACTTTTCCGTAGGAGTGAAAATCTCCAGGGTCCATGCCTATTGATTGTCGGAGACATGCGGGGGGCTG
TGTTTGGTGGCTTGTTAAATGGTCCTCTCAGGCCTACAGAGAAAAGAAAATACCAGGGAACTAATCAGACATTTGTATTC
ACAACGATTTATGGTGAACCTAGGCTTTTCAGACCAACCGGTGCCAACAGGTACTACTACTTATGCTTGAATGATGCTTT
GGCATTTGGAGGAGGTGGGAGTTTCGCGTTGTGCCTCGATGAAGATTTGTTACATGGAACCAGTGGATCATGTCAGACAT
TTGGGAACTCATGCTTGGCTCATAGTCCAGATTTTGAACTGAAGAATGTTGAGTTTAGAAGTTTGAAAAGCGTGCCGCGA
GTATCCAAAATTCAATCCAACTTTTGTTGGAGAAAAGAACAGGGTCAGGTGGTTGGTGGTTCTGTGGGGTTTTACTCATT
CATGGGGTCGTTCAACATAGTTGGCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16409.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis