Browse Element(s) Details


Os.53343.1.S1_x_at

Description gb:AK072144.1
DB_XREF= gi:32982167
TID=Os.53343.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013128O20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128O20, full insert sequence.
FL= gb:AK072144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2568011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25630OsAffx.16451.1.A1_x_at3/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25630Os.45161.1.A1_x_at2/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25630OsAffx.22699.1.S1_x_at2/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25630OsAffx.16451.1.A1_at1/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25640NANA7+14697164..14700360hypothetical protein
LOC_Os07g25650Os.46303.1.S1_x_at1/117+14700817..14707194hypothetical protein
LOC_Os07g25660NANA7+14710606..14712683hypothetical protein
LOC_Os07g25670NANA7+14717663..14718388hypothetical protein
LOC_Os07g25680Os.53343.1.S1_x_at11/117+14721415..14729559Protein kinase domain containing protein, expressed
LOC_Os07g25680OsAffx.28586.1.S1_at11/117+14721415..14729559Protein kinase domain containing protein, expressed
LOC_Os07g25690Os.16456.1.S1_at11/117+14731541..14733207Al-induced protein, putative, expressed
LOC_Os07g25690OsAffx.5438.1.S1_at8/117+14731541..14733207Al-induced protein, putative, expressed
LOC_Os07g25700OsAffx.16409.1.S1_s_at11/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25700OsAffx.16409.1.S1_at8/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25710Os.28062.1.S1_a_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25710Os.28062.2.S2_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53343.1.S1_x_at--1063--10051Chr07:14724974..14724998 (25 bp)
TAGTCAATCAGCAGGCGGATCATTC
LOC_Os07g25680
Os.53343.1.S1_x_at--629--7951Chr07:14724990..14725014 (25 bp)
GGATCATTCTGCTGTGCCACATCAT
LOC_Os07g25680
Os.53343.1.S1_x_at--826--3191Chr07:14725032..14725056 (25 bp)
CAATCCTGCAATCCCAACTGATGTT
LOC_Os07g25680
Os.53343.1.S1_x_at--1070--7911Chr07:14725057..14725081 (25 bp)
GGTTGTGATCCATTTGTACCTTCCA
LOC_Os07g25680
Os.53343.1.S1_x_at--764--9971Chr07:14725073..14725097 (25 bp)
TACCTTCCACCAGTTCTTTAGATGA
LOC_Os07g25680
Os.53343.1.S1_x_at--649--10111Chr07:14725152..14725176 (25 bp)
TATGAGTGAGAGGACCTCCCCTGAC
LOC_Os07g25680
Os.53343.1.S1_x_at--1140--2071Chr07:14725175..14725199 (25 bp)
ACATTCTTTCTGATTTCTTCGCCAA
LOC_Os07g25680
Os.53343.1.S1_x_at--166--9051Chr07:14725203..14725227 (25 bp)
TGCAGCACAATCATTAAGCCCTTTC
LOC_Os07g25680
Os.53343.1.S1_x_at--1040--5431Chr07:14725231..14725255 (25 bp)
GAACCTGTACTTAGCTTGAACATGC
LOC_Os07g25680
Os.53343.1.S1_x_at--2--6831Chr07:14725357..14725381 (25 bp)
GTTTATCCTTTGGTACATGCAGAGC
LOC_Os07g25680
Os.53343.1.S1_x_at--843--791Chr07:14725403..14725427 (25 bp)
ATGTGGCTCCTCAGAATGATGTTCA
LOC_Os07g25680
Target Sequence 
TAGTCAATCAGCAGGCGGATCATTCTGCTGTGCCACATCATGTTAGTTGGGACACCCCCAATCCTGCAATCCCAACTGAT
GTTGGTTGTGATCCATTTGTACCTTCCACCAGTTCTTTAGATGATTCTCACAAGGAACCAATTATCCCTAAAAAGGATAA
TAAGGACATTGTTGGTGGTATGAGTGAGAGGACCTCCCCTGACATTCTTTCTGATTTCTTCGCCAACACTGCAGCACAAT
CATTAAGCCCTTTCAATGAACCTGTACTTAGCTTGAACATGCATAATTATGAACCTCAGAGATGGTCATTCTTCAGAAAC
CTTGCACAAAATGAATTTGAACATAAAAATAAGGAGCAAGACCTGGCAAAGATCGAGGAGGGAGTTTATCCTTTGGTACA
TGCAGAGCATGATGCAGTTAACGTGAAGAATGTGGCTCCTCAGAATGATGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53343.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis