Browse Element(s) Details


Os.16456.1.S1_at

Description gb:AK102261.1
DB_XREF= gi:32987470
TID=Os.16456.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088K11, full insert sequence.
FL= gb:AK102261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2569011/11Al-induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25650Os.46303.1.S1_x_at1/117+14700817..14707194hypothetical protein
LOC_Os07g25660NANA7+14710606..14712683hypothetical protein
LOC_Os07g25670NANA7+14717663..14718388hypothetical protein
LOC_Os07g25680Os.53343.1.S1_x_at11/117+14721415..14729559Protein kinase domain containing protein, expressed
LOC_Os07g25680OsAffx.28586.1.S1_at11/117+14721415..14729559Protein kinase domain containing protein, expressed
LOC_Os07g25690Os.16456.1.S1_at11/117+14731541..14733207Al-induced protein, putative, expressed
LOC_Os07g25690OsAffx.5438.1.S1_at8/117+14731541..14733207Al-induced protein, putative, expressed
LOC_Os07g25700OsAffx.16409.1.S1_s_at11/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25700OsAffx.16409.1.S1_at8/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25710Os.28062.1.S1_a_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25710Os.28062.2.S2_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16456.1.S1_at--106--5051Chr07:14732798..14732817 (20 bp)
GCAGAAGCATCCTGCAGTTCTTCAG
LOC_Os07g25690
Os.16456.1.S1_at--1041--6431Chr07:14732827..14732851 (25 bp)
GATCAGATGTATCATGCTGTGGACA
LOC_Os07g25690
Os.16456.1.S1_at--961--411Chr07:14732837..14732861 (25 bp)
ATCATGCTGTGGACAACCTCAACTG
LOC_Os07g25690
Os.16456.1.S1_at--475--2551Chr07:14732857..14732881 (25 bp)
AACTGAAAGCTTCTTCCCTTTGTGA
LOC_Os07g25690
Os.16456.1.S1_at--20--291Chr07:14732928..14732952 (25 bp)
ATAGTGCAATACTGAAATGTTCTTC
LOC_Os07g25690
Os.16456.1.S1_at--217--5591Chr07:14732941..14732965 (25 bp)
GAAATGTTCTTCATGCTTCTCCGAT
LOC_Os07g25690
Os.16456.1.S1_at--45--9631Chr07:14732951..14732975 (25 bp)
TCATGCTTCTCCGATGTTGGTGATT
LOC_Os07g25690
Os.16456.1.S1_at--420--3811Chr07:14732959..14732983 (25 bp)
CTCCGATGTTGGTGATTATGCTAAT
LOC_Os07g25690
Os.16456.1.S1_at--946--2931Chr07:14733008..14733032 (25 bp)
AAGGCTATAGGCTCTGTTGTGAAAG
LOC_Os07g25690
Os.16456.1.S1_at--701--51Chr07:14733051..14733075 (25 bp)
ATTGATCTTCTCTACTATACATACA
LOC_Os07g25690
Os.16456.1.S1_at--304--10431Chr07:14733161..14733185 (25 bp)
TTGTAATTCCTACACATCTAGTGAT
LOC_Os07g25690
Target Sequence 
GCAGAAGCATCCTGCAGTTCTTCAGGTGCGNCCTGATCAGATGTATCATGCTGTGGACAACCTCAACTGAAAGCTTCTTC
CCTTTGTGAGANNNNNNNNNNGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATACNAAGTATAGTGCAATACTGA
AATGTTCTTCATGCTTCTCCGATGTTGGTGATTATGCTAATCGACNATCTAATTAGGCAGTAAAGAAGGCTATAGGCTCT
GTTGTGAAAGAGTTTCATGTTATTCTTTATTGATCTTCTCTACTATACATACATCGAAATATATACAGCCAATGTATTAC
TAATTGAGGGAATAACAATTACTTACAATGTTNNTGNTAATTCCTACTTTACAATGTTGTTGTAATTCCTACACATCTAG
TGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis