Browse Element(s) Details


OsAffx.5438.1.S1_at

Description tigr:9635.m02463
TID=OsAffx.5438.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g256908/11Al-induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25650Os.46303.1.S1_x_at1/117+14700817..14707194hypothetical protein
LOC_Os07g25660NANA7+14710606..14712683hypothetical protein
LOC_Os07g25670NANA7+14717663..14718388hypothetical protein
LOC_Os07g25680Os.53343.1.S1_x_at11/117+14721415..14729559Protein kinase domain containing protein, expressed
LOC_Os07g25680OsAffx.28586.1.S1_at11/117+14721415..14729559Protein kinase domain containing protein, expressed
LOC_Os07g25690Os.16456.1.S1_at11/117+14731541..14733207Al-induced protein, putative, expressed
LOC_Os07g25690OsAffx.5438.1.S1_at8/117+14731541..14733207Al-induced protein, putative, expressed
LOC_Os07g25700OsAffx.16409.1.S1_s_at11/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25700OsAffx.16409.1.S1_at8/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25710Os.28062.1.S1_a_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25710Os.28062.2.S2_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5438.1.S1_at--579--6371Chr07:14732368..14732392 (25 bp)
GATCCTCTTGGCAATTCCGAGGTCA
LOC_Os07g25690
OsAffx.5438.1.S1_at--727--3131Chr07:14732379..14732403 (25 bp)
CAATTCCGAGGTCAATGTTAGGCTT
LOC_Os07g25690
OsAffx.5438.1.S1_at--241--6791Chr07:14732395..14732419 (25 bp)
GTTAGGCTTGGTTCAGTAGTGGCTC
LOC_Os07g25690
OsAffx.5438.1.S1_at--462--6751Chr07:14732405..14732429 (25 bp)
GTTCAGTAGTGGCTCTGGCTCACAG
LOC_Os07g25690
OsAffx.5438.1.S1_at--103--9471Chr07:14732418..14732442 (25 bp)
TCTGGCTCACAGCTTTGCTGATGAT
LOC_Os07g25690
OsAffx.5438.1.S1_at--959--6291Chr07:14732437..14732461 (25 bp)
GATGATGCACTGCACTCTTCCGAGT
LOC_Os07g25690
OsAffx.5438.1.S1_at--491--10491Chr07:14732454..14732478 (25 bp)
TTCCGAGTGTTTGACCTTACCTAGA
LOC_Os07g25690
OsAffx.5438.1.S1_at--183--8911Chr07:14732465..14732489 (25 bp)
TGACCTTACCTAGAAGGCCGAGAAA
LOC_Os07g25690
OsAffx.5438.1.S1_at--760--10471Chr07:14733296..14733320 (25 bp)
TTACTCATGATGTGGCAATTGTGGC
NONE
OsAffx.5438.1.S1_at--73--8671Chr07:14733315..14733339 (25 bp)
TGTGGCTAATGCAACGAGAGGTGAT
NONE
OsAffx.5438.1.S1_at--926--231NONE
ATATACAAAATTCTTCTCGCAACGA
NONE
Target Sequence 
GATCCTCTTGGCAATTCCGAGGTCAATGTTAGGCTTGGTTCAGTAGTGGCTCTGGCTCACAGCTTTGCTGATGATGCACT
GCACTCTTCCGAGTGTTTGACCTTACCTAGAAGGCCGAGAAAGATTACTCATGATGTGGCAATTGTGGCTAATGCAACGA
GAGGTGATAAGTTGATAACATTTAAGAACATAATATACAAAATTCTTCTCGCAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis