Browse Element(s) Details


Os.28062.1.S1_a_at

Description gb:AY224478.1
DB_XREF= gi:29367482
TID=Os.28062.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28062 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) isolate 29112 phosphate starvation response regulator-like protein mRNA, complete cds.
PROD=phosphate starvation response regulator-likeprotein
FL= gb:AY224478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2571011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25680Os.53343.1.S1_x_at11/117+14721415..14729559Protein kinase domain containing protein, expressed
LOC_Os07g25680OsAffx.28586.1.S1_at11/117+14721415..14729559Protein kinase domain containing protein, expressed
LOC_Os07g25690Os.16456.1.S1_at11/117+14731541..14733207Al-induced protein, putative, expressed
LOC_Os07g25690OsAffx.5438.1.S1_at8/117+14731541..14733207Al-induced protein, putative, expressed
LOC_Os07g25700OsAffx.16409.1.S1_s_at11/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25700OsAffx.16409.1.S1_at8/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25710Os.28062.1.S1_a_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25710Os.28062.2.S2_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25720OsAffx.16410.1.S1_at10/117+14759958..14762813hypothetical protein
LOC_Os07g25720Os.49832.1.S1_at2/117+14759958..14762813hypothetical protein
LOC_Os07g25730Os.17004.1.S1_at8/117+14764615..14765215hypothetical protein
LOC_Os07g25740OsAffx.5439.1.S1_x_at11/117+14772929..14777334KH domain containing protein, expressed
LOC_Os07g25740Os.57022.1.S1_at11/117+14772929..14777334KH domain containing protein, expressed
LOC_Os07g25740OsAffx.5439.1.S1_at11/117+14772929..14777334KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28062.1.S1_a_at--130--2411Chr07:14753367..14753391 (25 bp)
AAACAGTTCTATTGCAGCTGGTGAT
LOC_Os07g25710
Os.28062.1.S1_a_at--639--8751Chr07:14753464..14753486 (23 bp)
TGTACTGAAACTCAACCACAGGTTG
LOC_Os07g25710
Os.28062.1.S1_a_at--724--5191Chr07:14754712..14754736 (25 bp)
GCAATCATCTGTCGCAGTTCACCAA
LOC_Os07g25710
Os.28062.1.S1_a_at--1086--3071Chr07:14754735..14754759 (25 bp)
AATCAGCTGCCCAACAATCAGTTTC
LOC_Os07g25710
Os.28062.1.S1_a_at--380--3191Chr07:14754749..14754773 (25 bp)
CAATCAGTTTCATCTCAATCAGGAG
LOC_Os07g25710
Os.28062.1.S1_a_at--1005--5271Chr07:14754837..14754861 (25 bp)
GAATGAGATGGACTCCTGAACTTCA
LOC_Os07g25710
Os.28062.1.S1_a_at--118--9271Chr07:14754850..14754874 (25 bp)
TCCTGAACTTCATGAGCGCTTTGTA
LOC_Os07g25710
Os.28062.1.S1_a_at--372--1651Chr07:14754864..14754888 (25 bp)
AGCGCTTTGTAGATGCTGTCAATCT
LOC_Os07g25710
Os.28062.1.S1_a_at--550--3871Chr07:14754879..14754903 (25 bp)
CTGTCAATCTACTTGGTGGCAGTGA
LOC_Os07g25710
Os.28062.1.S1_a_at--815--5511Chr07:14754987..14755007 (21 bp)
GAAAAAGCTACTCCCAAGGGTGTGT
LOC_Os07g25710
Os.28062.1.S1_a_at--68--5491Chr07:14755155..14755179 (25 bp)
GAACAGCTCGATACAGACCAGAATT
LOC_Os07g25710
Target Sequence 
AAACAGTTCTATTGCAGCTGGTGATGAACTTGCCAAGCAAAGTGAATGGTGGAATGATTTTATGAATTATGACTGGAAAG
ATATTGATAACACAGCTTGTACTGAAACTCAACCACAGGTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCA
GCTGCCCAACAATCAGTTTCATCTCAATCAGGAGAACCTTCTGCAGTTGCTATACCCTCGCCCTCTGGTGCCTCCAATAC
CTCCAACTCCAAGACACGAATGAGATGGACTCCTGAACTTCATGAGCGCTTTGTAGATGCTGTCAATCTACTTGGTGGCA
GTGAAAAAGCTACTCCCAAGGGTGTGTTAAAGCTAATGAAGGCAGACAATTTGACCATTTATCATGTTAAAAGTCACCTT
CAGAAATACAGAACAGCTCGATACAGACCAGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28062.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis