Browse Element(s) Details


OsAffx.16410.1.S1_at

Description tigr:9635.m02468
TID=OsAffx.16410.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2572010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25700OsAffx.16409.1.S1_s_at11/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25700OsAffx.16409.1.S1_at8/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25710Os.28062.1.S1_a_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25710Os.28062.2.S2_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25720OsAffx.16410.1.S1_at10/117+14759958..14762813hypothetical protein
LOC_Os07g25720Os.49832.1.S1_at2/117+14759958..14762813hypothetical protein
LOC_Os07g25730Os.17004.1.S1_at8/117+14764615..14765215hypothetical protein
LOC_Os07g25740OsAffx.5439.1.S1_x_at11/117+14772929..14777334KH domain containing protein, expressed
LOC_Os07g25740Os.57022.1.S1_at11/117+14772929..14777334KH domain containing protein, expressed
LOC_Os07g25740OsAffx.5439.1.S1_at11/117+14772929..14777334KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16410.1.S1_at--801--3231Chr07:14762527..14762551 (25 bp)
CAACCCTAGCCTCCGAATGGATAGT
LOC_Os07g25720
OsAffx.16410.1.S1_at--39--7951Chr07:14762509..14762533 (25 bp)
GGATAGTGATGCTGCTAGCCACCGC
LOC_Os07g25720
OsAffx.16410.1.S1_at--721--4211Chr07:14762488..14762512 (25 bp)
CCGCTAGATCTGAAGGTGGCTCGTT
LOC_Os07g25720
OsAffx.16410.1.S1_at--758--471Chr07:14762481..14762505 (25 bp)
ATCTGAAGGTGGCTCGTTCTCTGTC
LOC_Os07g25720
OsAffx.16410.1.S1_at--609--2791NONE
AAGATGAAGACTGAGCCCGAGTTTT
NONE
OsAffx.16410.1.S1_at--955--753Chr08:18286685..18286908 (25 bp)
AGTCTGGTAGTCCTCCCGGCGTTGT
NONE
OsAffx.16410.1.S1_at--826--2191Chr07:14760130..14760154 (25 bp)
ACAAGAGGCGAGTCGAACGGGTTCA
LOC_Os07g25720
OsAffx.16410.1.S1_at--491--6731Chr07:14760110..14760134 (25 bp)
GTTCATGGACACCAAGAATCCGCTG
LOC_Os07g25720
OsAffx.16410.1.S1_at--942--6091Chr07:14760049..14760073 (25 bp)
GAGTCTGGCACAACTGGCACCGATG
LOC_Os07g25720
OsAffx.16410.1.S1_at--510--2211Chr07:14760040..14760064 (25 bp)
ACAACTGGCACCGATGTCTTCTTCT
LOC_Os07g25720
OsAffx.16410.1.S1_at--1156--2051Chr07:14760012..14760036 (25 bp)
ACTTGCTTCTCGATCGCCGTCATGG
LOC_Os07g25720
Target Sequence 
CAACCCTAGCCTCCGAATGGATAGTGATGCTGCTAGCCACCGCTAGATCTGAAGGTGGCTCGTTCTCTGTCGGGGCAGCG
ACGTACTGGGAGAGGGGCAAGGAGATGGAAGAAGGAAGGGAGATCAAATCCATTCTCATTTTATATGAGGAATGGAAGAT
GAAGACTGAGCCCGAGTTTTGGGCGCGTCTTGTACAGAGGCTCGACGTGTGCACGTTCACGCGGGAGTCTGGTAGTCCTC
CCGGCGTTGTCTTCCTCAACTCCGGCGACCGCTCCGACTCCGGCGAGGGTCGGAACAAGAGGCGAGTCGAACGGGTTCAT
GGACACCAAGAATCCGCTGCCGCGCATTTGCACCGTCGTCCCAGGGCCCGGCCCCGAGTCTGGCACAACTGGCACCGATG
TCTTCTTCTCCGACTTGCTTCTCGATCGCCGTCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis