Browse Element(s) Details


OsAffx.5439.1.S1_x_at

Description tigr:9635.m02470
TID=OsAffx.5439.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2574011/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25710Os.28062.1.S1_a_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25710Os.28062.2.S2_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25720OsAffx.16410.1.S1_at10/117+14759958..14762813hypothetical protein
LOC_Os07g25720Os.49832.1.S1_at2/117+14759958..14762813hypothetical protein
LOC_Os07g25730Os.17004.1.S1_at8/117+14764615..14765215hypothetical protein
LOC_Os07g25740OsAffx.5439.1.S1_x_at11/117+14772929..14777334KH domain containing protein, expressed
LOC_Os07g25740Os.57022.1.S1_at11/117+14772929..14777334KH domain containing protein, expressed
LOC_Os07g25740OsAffx.5439.1.S1_at11/117+14772929..14777334KH domain containing protein, expressed
LOC_Os07g25760Os.27034.1.A1_at5/117+14798099..14803594transposon protein, putative, Mutator sub-class
LOC_Os07g25760OsAffx.5441.1.S1_at4/117+14798099..14803594transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5439.1.S1_x_at--410--9931Chr07:14776743..14776767 (25 bp)
TACGGCAATGGTCATGTTCCCTCAT
LOC_Os07g25740
OsAffx.5439.1.S1_x_at--547--1511Chr07:14776695..14776719 (25 bp)
AGCAGCCAGGTTAATATCTCTTCAA
LOC_Os07g25740
OsAffx.5439.1.S1_x_at--65--3911Chr07:14776670..14776694 (25 bp)
CTGGTCAATATTCAGCTGGCAATTT
LOC_Os07g25740
OsAffx.5439.1.S1_x_at--376--1071Chr07:14776641..14776665 (25 bp)
AGGGTTGATCACAGGCTTTCTCAGA
LOC_Os07g25740
OsAffx.5439.1.S1_x_at--812--9411Chr07:14776605..14776629 (25 bp)
TCGGTACAAAACTCTATCAGCGCCT
LOC_Os07g25740
OsAffx.5439.1.S1_x_at--524--1651Chr07:14776587..14776611 (25 bp)
AGCGCCTTCGACTTGGGATGTTTGG
LOC_Os07g25740
OsAffx.5439.1.S1_x_at--181--10251Chr07:14776570..14776591 (22 bp)
TTTGGGCTCCCCACAAATTCAGAAA
LOC_Os07g25740
OsAffx.5439.1.S1_x_at--680--5551Chr07:14775614..14775638 (25 bp)
GAAACCTACCATTGGGTGTGGCACT
LOC_Os07g25740
OsAffx.5439.1.S1_x_at--357--6031Chr07:14774493..14774516 (24 bp)
GAGAGGAATCAAGACTGCCACCATA
LOC_Os07g25740
OsAffx.5439.1.S1_x_at--61--9971Chr07:14773337..14773361 (25 bp)
TACCCGCTTCCAGAGACGAGTGACG
LOC_Os07g25740
OsAffx.5439.1.S1_x_at--143--6311Chr07:14773286..14773310 (25 bp)
GATGAGGCGCAATCGGCTCTGGCCA
LOC_Os07g25740
Target Sequence 
TACGGCAATGGTCATGTTCCCTCATCGGCTATTGATGAATTAACTACAAGCAGCCAGGTTAATATCTCTTCAACTGGTCA
ATATTCAGCTGGCAATTTGTCAAGGGTTGATCACAGGCTTTCTCAGAATGAAATTGACTCGGTACAAAACTCTATCAGCG
CCTTCGACTTGGGATGTTTGGGCTCCCCACAAATTCAGAAACCTACCATTGGGTGTGGCACTGAGATCAACAACCCAATT
AATGAGGTGGAGAAACCAGCTAATGGAAATGGCACTGGAATTAACAATTTGAATACTGGGATGCAGAATGAAAATGGAAT
TGACGTTTCAAATCATGGAGCTACATCTCTGGAGGAAAAAAAACTTTTGAGAGGAATCAAGACTGCCACCATAACTAGGA
TCACATATGAGGTTGCTGTTTGCGGAGATAATGGAAACGACTTCACTATGATTAGAGAGATGTCTGGTGCAGACGTTACT
GCCCACTACCCGCTTCCAGAGACGAGTGACGGTATGATCGTGATATCTGGAACGCCAGATGAGGCGCAATCGGCTCTGGC
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5439.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis