Browse Element(s) Details


OsAffx.5441.1.S1_at

Description tigr:9635.m02474
TID=OsAffx.5441.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2578011/11hypothetical protein
LOC_Os07g257604/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25760Os.27034.1.A1_at5/117+14798099..14803594transposon protein, putative, Mutator sub-class
LOC_Os07g25760OsAffx.5441.1.S1_at4/117+14798099..14803594transposon protein, putative, Mutator sub-class
LOC_Os07g25770OsAffx.5440.1.S1_at11/117+14807179..14807499hypothetical protein
LOC_Os07g25780OsAffx.5441.1.S1_at11/117+14808994..14809500hypothetical protein
LOC_Os07g25790NANA7+14816298..14816803hypothetical protein
LOC_Os07g25800OsAffx.28587.1.S1_at11/117+14819084..14820554F-box domain containing protein, expressed
LOC_Os07g25810Os.6042.1.S1_at11/117+14822373..14823930transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g25820OsAffx.28588.1.S1_at11/117+14825961..14826463hypothetical protein
LOC_Os07g25830OsAffx.5443.1.S1_at11/117+14828639..14829619hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5441.1.S1_at--943--3751Chr07:14809446..14809470 (25 bp)
CTCTTGGTTCTGTTCGTAGTTCTTC
LOC_Os07g25780
OsAffx.5441.1.S1_at--212--6951Chr07:14809431..14809455 (25 bp)
GTAGTTCTTCTTGCTATGCCTGCAC
LOC_Os07g25780
OsAffx.5441.1.S1_at--1084--9173Chr07:14809418..14809439 (22 bp)
TGCCTGCACGCATATATGGTAAACA
LOC_Os07g25780
OsAffx.5441.1.S1_at--396--2412Chr08:10789879..10789903 (23 bp)
AAACACATGGTTTACACTGCTAGCC
NONE
OsAffx.5441.1.S1_at--947--3811Chr07:14809154..14809178 (25 bp)
CTGCTAGCCAATCCAAGAACGAAGG
LOC_Os07g25780
OsAffx.5441.1.S1_at--1033--7832Chr07:14809127..14809151 (25 bp)
GGTACAAAGTCGGTATCAATGGTTT
LOC_Os07g25780
OsAffx.5441.1.S1_at--313--6852Chr07:14809106..14809130 (25 bp)
GTTTGGAACCAGTGAAATGCACCAT
LOC_Os07g25780
OsAffx.5441.1.S1_at--87--3011Chr07:14809091..14809115 (25 bp)
AATGCACCATTTCCCCAGATGGATA
LOC_Os07g25780
OsAffx.5441.1.S1_at--928--1312Chr07:14809075..14809099 (25 bp)
AGATGGATACTGCTGTTATGACAAA
LOC_Os07g25780
OsAffx.5441.1.S1_at--720--1251Chr07:14809042..14809066 (25 bp)
AGATTACAAGACGTGCTACCCTAAC
LOC_Os07g25780
OsAffx.5441.1.S1_at--866--7312Chr07:14809030..14809054 (25 bp)
GTGCTACCCTAACGCATCAGAATGC
LOC_Os07g25780
Target Sequence 
CTCTTGGTTCTGTTCGTAGTTCTTCTTGCTATGCCTGCACGCATATATGGTAAACACATGGTTTACACTGCTAGCCAATC
CAAGAACGAAGGAAGGTACAAAGTCGGTATCAATGGTTTGGAACCAGTGAAATGCACCATTTCCCCAGATGGATACTGCT
GTTATGACAAAAAATCGAAAGATTACAAGACGTGCTACCCTAACGCATCAGAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis