Browse Element(s) Details


Os.27034.1.A1_at

Description gb:CB634492
DB_XREF= gi:29629483
DB_XREF=OSIIEb14A17.r
CLONE=OSIIEb14A17
TID=Os.27034.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27034 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_175060.1 (A.thaliana) mutator-like transposase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g250808/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g257605/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25050OsAffx.4421.1.S1_at11/115+14417561..14419035hypothetical protein
LOC_Os05g25050OsAffx.28941.1.S1_x_at1/115+14417561..14419035hypothetical protein
LOC_Os05g25060OsAffx.14819.1.S1_at11/115+14422340..14428742expressed protein
LOC_Os05g25070Os.8036.1.S1_at4/115+14432264..14436147expressed protein
LOC_Os05g25070OsAffx.15286.1.S1_at2/115+14432264..14436147expressed protein
LOC_Os05g25080Os.27034.1.A1_at8/115+14442907..14446172transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g25090OsAffx.4422.1.S1_at11/115+14446088..14447149hypothetical protein
LOC_Os05g25100OsAffx.31813.1.S1_x_at2/115+14457242..14465185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25100Os.51869.1.S1_at2/115+14457242..14465185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25110NANA5+14466583..14470785retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27034.1.A1_at--285--8652Chr05:14445493..14445517 (25 bp)
TGGGCACAACAAGGCTTCATGTCAC
LOC_Os05g25080
Os.27034.1.A1_at--1112--9851Chr05:14445655..14445679 (25 bp)
TACACAGGATCAGGCACATGTTGCA
LOC_Os05g25080
Os.27034.1.A1_at--886--5112Chr05:14445668..14445692 (25 bp)
GCACATGTTGCAGCCAAGGTAATAA
LOC_Os05g25080
Os.27034.1.A1_at--1087--352Chr05:14445689..14445713 (25 bp)
ATAATGGCTTGCTTCCTGTTTGCAC
LOC_Os05g25080
Os.27034.1.A1_at--227--9091NONE
TGCTACCACTTGCTGTTGCAGGATA
NONE
Os.27034.1.A1_at--537--7951NONE
GGATATGGCAAAGGCTTCATCATCT
NONE
Os.27034.1.A1_at--35--10091NONE
TAGGAGATCTCCTCGGCTAAACAAA
NONE
Os.27034.1.A1_at--733--5352Chr05:14445951..14445975 (25 bp)
GAAGATCACCACCTTTTGTAGAGTA
LOC_Os05g25080
Os.27034.1.A1_at--247--7071Chr05:14445996..14446020 (25 bp)
GTAATGTGATAGCTGTGGCATCTAA
LOC_Os05g25080
Os.27034.1.A1_at--280--271Chr05:14446020..14446044 (25 bp)
ATAGGCCATCTTTTGTGTAATAACT
LOC_Os05g25080
Os.27034.1.A1_at--895--1432Chr05:14446073..14446097 (25 bp)
AGCAACCTGTGACATTTACTGCCAC
LOC_Os05g25080
Target Sequence 
TGGGCACAACAAGGCTTCATGTCACAAGAGGAGACAGCAACAGCAGGGCAATGTGCAGGNTCAAGGATNTCAGCCAAGCT
NTACACAGGATCAGGCACATGTTGCAGCCAAGGTAATAATGGCTTGCTTCCTGTTTGCACTTGCTTCAGTCCTATGTNTA
ANTGCTACCACTTGCTGTTGCAGGATATGGCAAAGGCTTCATCATCTCGAAAGAGGCAGTTGAAAGCTTCAACATCTGCA
AGGGCAGCTGGAATGGTTGGGGTTGAGCAGCCAAGAAAGAAGTTGGAAGTTAGGAGATCTCCTCGGCTAAACAAAGGATG
AATAGGATATTAGGTTCATAAAACTTTTGGACATGCTTANTGGATTAGCAATAGGCAGAAGATCACCACCTTTTGTAGAG
TAACATGTGGTATGAAACTTCTGTAATGTGATAGCTGTGGCATCTAATAGGCCATCTTTTGTGTAATAACTGAAGGAATT
ACAGTGCTCTAAANTTTGNAGCAACCTGTGACATTTACTGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27034.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis