Browse Element(s) Details


OsAffx.14819.1.S1_at

Description tigr:9633.m02249
TID=OsAffx.14819.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2506011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25010Os.10827.1.S1_x_at10/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010Os.46055.2.S1_x_at5/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.2.S1_x_at3/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.3.S1_x_at2/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.1.S1_at2/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.3.S1_at1/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.1.S1_s_at9/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.7.S1_s_at8/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.2.S1_x_at6/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.5.S1_x_at2/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25040Os.28539.1.S1_at11/115+14411311..14416247expressed protein
LOC_Os05g25040OsAffx.24095.1.A1_at11/115+14411311..14416247expressed protein
LOC_Os05g25040Os.10623.1.S1_x_at1/115+14411311..14416247expressed protein
LOC_Os05g25040OsAffx.3012.1.S1_at1/115+14411311..14416247expressed protein
LOC_Os05g25040Os.51711.1.S1_at1/115+14411311..14416247expressed protein
LOC_Os05g25030NANA5+14415880..14416254hypothetical protein
LOC_Os05g25050OsAffx.4421.1.S1_at11/115+14417561..14419035hypothetical protein
LOC_Os05g25050OsAffx.28941.1.S1_x_at1/115+14417561..14419035hypothetical protein
LOC_Os05g25060OsAffx.14819.1.S1_at11/115+14422340..14428742expressed protein
LOC_Os05g25070Os.8036.1.S1_at4/115+14432264..14436147expressed protein
LOC_Os05g25070OsAffx.15286.1.S1_at2/115+14432264..14436147expressed protein
LOC_Os05g25080Os.27034.1.A1_at8/115+14442907..14446172transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g25090OsAffx.4422.1.S1_at11/115+14446088..14447149hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14819.1.S1_at--851--2251Chr05:14422898..14422922 (25 bp)
AAATATGCATCGATTCAGCGTGAAT
LOC_Os05g25060
OsAffx.14819.1.S1_at--217--1191Chr05:14422854..14422878 (25 bp)
AGTACCTCAGTACCAGTGATATCAT
LOC_Os05g25060
OsAffx.14819.1.S1_at--915--7391Chr05:14422839..14422863 (25 bp)
GTGATATCATCAAATCGGATCCCGA
LOC_Os05g25060
OsAffx.14819.1.S1_at--183--1131Chr05:14422801..14422825 (25 bp)
AGTGCACTGCAATCTCAATGTGGGA
LOC_Os05g25060
OsAffx.14819.1.S1_at--262--10191Chr05:14422735..14422759 (25 bp)
TATACTGGACAGTCTCAACTCTCTC
LOC_Os05g25060
OsAffx.14819.1.S1_at--162--451Chr05:14422677..14422701 (25 bp)
ATCTAGATCAGCTTTCTTGCATGAA
LOC_Os05g25060
OsAffx.14819.1.S1_at--711--4711Chr05:14422564..14422588 (25 bp)
GCTGGCTTGAGCGAGGACATTGTTA
LOC_Os05g25060
OsAffx.14819.1.S1_at--866--2731Chr05:14422512..14422536 (25 bp)
AAGAACAACATGATCTCGGCTGGTT
LOC_Os05g25060
OsAffx.14819.1.S1_at--9--3491Chr05:14422482..14422506 (25 bp)
CAGGAGTATCTGCAGTTGACGAAGT
LOC_Os05g25060
OsAffx.14819.1.S1_at--1148--9611Chr05:14422426..14422450 (25 bp)
TCATGCGGAGAGATGCCGTCAGCAT
LOC_Os05g25060
OsAffx.14819.1.S1_at--372--6471Chr05:14422370..14422394 (25 bp)
GATAAATGGGACGTTTTCTGCTAAA
LOC_Os05g25060
Target Sequence 
AAATATGCATCGATTCAGCGTGAATGCTTTGAAAGATCTTTTAAAGTACCTCAGTACCAGTGATATCATCAAATCGGATC
CCGAACTTTGTTTTGTAAGTGCACTGCAATCTCAATGTGGGACAACTTTTGTGAACGACACTTCTTTTGTGGCTGATGGT
ACATATACTGGACAGTCTCAACTCTCTCTGCCAGAGAATATAACCAAGTCTTCAAATAGCAATCTAGATCAGCTTTCTTG
CATGAATTCGCTAAACACAAATGTATTTCCCGATGAGAAAGTTAGCAGTGAGTTCTCTGATTACATTATGAATACTCCAC
AATCTGATGCTAATGCTGGCTTGAGCGAGGACATTGTTATAGGTTCACATTTTGAGAGTGAACAGAAAGAACAACATGAT
CTCGGCTGGTTGGGGACAGGAGTATCTGCAGTTGACGAAGTACTTGATTCAATGAATTTGTATGGTGATGGTTCATGCGG
AGAGATGCCGTCAGCATCAGAAATTCTTGAATTATGGGAGCAGGATAGGATAAATGGGACGTTTTCTGCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis