Browse Element(s) Details


OsAffx.3012.1.S1_at

Description tigr:9630.m04851
TID=OsAffx.3012.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ring finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4955011/11Zinc finger, C3HC4 type family protein
LOC_Os05g250401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49510Os.52768.1.S1_at9/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.18333.1.S1_at6/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.22086.1.S1_x_at2/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49520Os.50290.1.S1_at11/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.9217.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.21372.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49530Os.11268.1.S1_at11/112+30270583..30273419expressed protein
LOC_Os02g49540OsAffx.3011.1.S1_at11/112+30275432..30275795hypothetical protein
LOC_Os02g49550OsAffx.3012.1.S1_at11/112+30276615..30277550Zinc finger, C3HC4 type family protein
LOC_Os02g49560OsAffx.12566.1.S1_at11/112+30289740..30290249bZIP transcription factor family protein, expressed
LOC_Os02g49570Os.14793.1.S1_at11/112+30291340..30300270Peptidase family U7 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016567biological_processprotein ubiquitination
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3012.1.S1_at--4--1671Chr02:30276955..30276979 (25 bp)
AGCCCGACCACCAGAGGTGGGACAT
LOC_Os02g49550
OsAffx.3012.1.S1_at--968--1711Chr02:30276961..30276985 (25 bp)
ACCACCAGAGGTGGGACATCGGCGT
LOC_Os02g49550
OsAffx.3012.1.S1_at--758--1511Chr02:30277012..30277036 (25 bp)
AGCAGGTCGGCATCAGGGTGGAGGA
LOC_Os02g49550
OsAffx.3012.1.S1_at--305--1691Chr02:30277110..30277134 (25 bp)
AGCCTCGTGGTTGACGGCGCCGACT
LOC_Os02g49550
OsAffx.3012.1.S1_at--133--4572Chr02:30277126..30277150 (25 bp)
GCGCCGACTACGACGGTGGAATCGA
LOC_Os02g49550
OsAffx.3012.1.S1_at--805--5692Chr02:30277131..30277155 (25 bp)
GACTACGACGGTGGAATCGACACGT
LOC_Os02g49550
OsAffx.3012.1.S1_at--452--5752Chr02:30277137..30277161 (25 bp)
GACGGTGGAATCGACACGTTCTTCC
LOC_Os02g49550
OsAffx.3012.1.S1_at--630--8211Chr02:30277143..30277167 (25 bp)
GGAATCGACACGTTCTTCCTCGACG
LOC_Os02g49550
OsAffx.3012.1.S1_at--981--4211Chr02:30277252..30277276 (25 bp)
CCGTGGAGAGCCTCCCGACCGTGGT
LOC_Os02g49550
OsAffx.3012.1.S1_at--918--1352Chr02:30277258..30277282 (25 bp)
AGAGCCTCCCGACCGTGGTCGTCGA
LOC_Os02g49550
OsAffx.3012.1.S1_at--660--4191Chr02:30277452..30277476 (25 bp)
CCCGAGTACGAGAACTGGAAGGCGA
LOC_Os02g49550
Target Sequence 
AGCCCGACCACCAGAGGTGGGACATCGGCGTGAACGGCGGCGGCGGCGACGAGTGGGAGCAGGTCGGCATCAGGGTGGAG
GAGGAGGAGGAGGAGGCCGCGGCGGCGGTGAGGAGCCTGGAGTGGGAGGTGCTCCTGGCCACGAACAGCCTCGGGAGCCT
CGTGGTTGACGGCGCCGACTACGACGGTGGAATCGACACGTTCTTCCTCGACGACGCCGACGACGTGCTGTTCGGGCAGC
TCGCCGCGGAGCACGAGCCCCCCGCCGCCAAGGGCGCGCGCGCGGCGGCGAAGGCCGCCGTGGAGAGCCTCCCGACCGTG
GTCGTCGACGCGGCCCGCGGCGACACGCAGTGCGCGGTGTGCAAGGACGGCATGGAGGCCGGCGAGCGGGCCAGGAGGCT
GCCCTGCGCGCACCTCTACCACGACGGCTGCATCCTGCCGTGGCTCGCCATCCGCAACACGTGCCCGCTGTGCCGCCATG
AGCTGCCCACCGATGACCCCGAGTACGAGAACTGGAAGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis