Browse Element(s) Details


Os.14793.1.S1_at

Description gb:AK070290.1
DB_XREF= gi:32980314
TID=Os.14793.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048E15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048E15, full insert sequence.
FL= gb:AK070290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4957011/11Peptidase family U7 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49530Os.11268.1.S1_at11/112+30270583..30273419expressed protein
LOC_Os02g49540OsAffx.3011.1.S1_at11/112+30275432..30275795hypothetical protein
LOC_Os02g49550OsAffx.3012.1.S1_at11/112+30276615..30277550Zinc finger, C3HC4 type family protein
LOC_Os02g49560OsAffx.12566.1.S1_at11/112+30289740..30290249bZIP transcription factor family protein, expressed
LOC_Os02g49570Os.14793.1.S1_at11/112+30291340..30300270Peptidase family U7 containing protein, expressed
LOC_Os02g49580NANA2+30302974..30303525expressed protein
LOC_Os02g49590OsAffx.3013.1.S1_at11/112+30304672..30307240ASC1-like protein 2, putative, expressed
LOC_Os02g49600Os.53695.1.S1_at11/112+30310272..30313936Leucine Rich Repeat family protein, expressed
LOC_Os02g49610Os.37523.1.S1_at11/112+30317371..30319797H/ACA ribonucleoprotein complex subunit 2, putative, expressed
LOC_Os02g49620Os.24692.1.A1_at11/112+30319915..30323596expressed protein
LOC_Os02g49630OsAffx.3014.1.S1_at11/112+30324133..30326791Tetraspanin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009642biological_processresponse to light intensity
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0008981molecular_functionprotease IV activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14793.1.S1_at--822--7731Chr02:30292364..30292388 (25 bp)
GGTGGATTCTCACAAGCTCTTGCTA
LOC_Os02g49570
Os.14793.1.S1_at--1017--5551Chr02:30292329..30292353 (25 bp)
GAAAGCCAATATACCCCATGATAGG
LOC_Os02g49570
Os.14793.1.S1_at--665--1031Chr02:30291831..30291855 (25 bp)
AGGTCCAGCTAGTTGAGATCTCAAA
LOC_Os02g49570
Os.14793.1.S1_at--326--8271Chr02:30291769..30291793 (25 bp)
GGCAGTTCATTGCTTGGAGTTGACA
LOC_Os02g49570
Os.14793.1.S1_at--183--971Chr02:30291723..30291747 (25 bp)
AGGATGTCACTTCCCTAAATGGAGT
LOC_Os02g49570
Os.14793.1.S1_at--883--5511Chr02:30291646..30291670 (25 bp)
GAAAATCAACTCTTATTGCTCGTAA
LOC_Os02g49570
Os.14793.1.S1_at--358--3371Chr02:30291592..30291616 (25 bp)
CACCAGTCAGTACCCTATGTTTTAC
LOC_Os02g49570
Os.14793.1.S1_at--1118--2711Chr02:30291500..30291524 (25 bp)
AAGCAGGTAGACTTGGGATCCGTTC
LOC_Os02g49570
Os.14793.1.S1_at--1135--7951Chr02:30291485..30291509 (25 bp)
GGATCCGTTCAGTACTTTTGGCACT
LOC_Os02g49570
Os.14793.1.S1_at--1064--10251Chr02:30291449..30291473 (25 bp)
TTTGTTCTTTTCATACTGCTGCCTA
LOC_Os02g49570
Os.14793.1.S1_at--650--6411Chr02:30291388..30291412 (25 bp)
GATCTTGATTTTCTAGTTCGCTTGA
LOC_Os02g49570
Target Sequence 
GGTGGATTCTCACAAGCTCTTGCTATTGCAAAACAGAAAGCCAATATACCCCATGATAGGAAGGTCCAGCTAGTTGAGAT
CTCAAAGCCCTCACCAACATTACCAGAGATCTTGTCAGGAATTGGCAGTTCATTGCTTGGAGTTGACAGGGCAGTGAAGG
GAGTGCTCCAGGATGTCACTTCCCTAAATGGAGTCCAAGCTAGAATGGATGGAATATTGTTTGAAAGATTGGAAGATTTG
TCTGGAGAAAATCAACTCTTATTGCTCGTAAAAGATATTGTTAATTATTTTGATTGATTCCACCAGTCAGTACCCTATGT
TTTACAAACAGTTATACATAGAAGAAGAAAATGTCAACATGTCAATAATAATTCACCTTACCTAGAGGCTAGAAGCAGGT
AGACTTGGGATCCGTTCAGTACTTTTGGCACTGTATATTCTATTTTGTTCTTTTCATACTGCTGCCTATGGAAATGTTGT
ACATGCCTTACTGAAAATTCAAGCGATCTTGATTTTCTAGTTCGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis