Browse Element(s) Details


Os.11268.1.S1_at

Description gb:AK121427.1
DB_XREF= gi:37991050
TID=Os.11268.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136B21, full insert sequence.
FL= gb:AK121427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4953011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49500NANA2+30248718..30250587hypothetical protein
LOC_Os02g49510Os.52768.1.S1_at9/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.18333.1.S1_at6/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.22086.1.S1_x_at2/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49520Os.50290.1.S1_at11/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.9217.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.21372.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49530Os.11268.1.S1_at11/112+30270583..30273419expressed protein
LOC_Os02g49540OsAffx.3011.1.S1_at11/112+30275432..30275795hypothetical protein
LOC_Os02g49550OsAffx.3012.1.S1_at11/112+30276615..30277550Zinc finger, C3HC4 type family protein
LOC_Os02g49560OsAffx.12566.1.S1_at11/112+30289740..30290249bZIP transcription factor family protein, expressed
LOC_Os02g49570Os.14793.1.S1_at11/112+30291340..30300270Peptidase family U7 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11268.1.S1_at--911--1671Chr02:30272479..30272503 (25 bp)
AGCCGGGCACGGAGAGCTTCACCAA
LOC_Os02g49530
Os.11268.1.S1_at--922--5331Chr02:30270992..30271016 (25 bp)
GAAGTACCAGCTGACCCTAATGATG
LOC_Os02g49530
Os.11268.1.S1_at--833--9011Chr02:30270928..30270952 (25 bp)
TGCAAGGCGACTATGATCACCTCAC
LOC_Os02g49530
Os.11268.1.S1_at--1008--951Chr02:30270811..30270835 (25 bp)
AGGACTTCAACCAATACCTGGCAAA
LOC_Os02g49530
Os.11268.1.S1_at--900--1751Chr02:30270796..30270820 (25 bp)
ACCTGGCAAATCTTAGCGAGCACTA
LOC_Os02g49530
Os.11268.1.S1_at--608--4051Chr02:30270780..30270804 (25 bp)
CGAGCACTACGACATCCCAAAAGTT
LOC_Os02g49530
Os.11268.1.S1_at--923--6591Chr02:30270758..30270782 (25 bp)
GTTGGCCCTGGTTAACTTTGCCTAT
LOC_Os02g49530
Os.11268.1.S1_at--619--10291Chr02:30270742..30270766 (25 bp)
TTTGCCTATTCAGAGCTTCGCAGGA
LOC_Os02g49530
Os.11268.1.S1_at--1096--931Chr02:30270721..30270745 (25 bp)
AGGAATGCTTCCTATGCTGTACCCA
LOC_Os02g49530
Os.11268.1.S1_at--374--3531Chr02:30270698..30270722 (25 bp)
CATCCAGCCATCTGTTAGCTTGTGA
LOC_Os02g49530
Os.11268.1.S1_at--1121--6331Chr02:30270675..30270699 (25 bp)
GATGCTCCTACCTGTATTGTTCTAA
LOC_Os02g49530
Target Sequence 
AGCCGGGCACGGAGAGCTTCACCAAGGTGGAAGCTCTGAAGTACCAGCTGACCCTAATGATGAATTGACTGAAGCTGATA
AGATGGGAGAAGAAGGGAACCTGCAAGGCGACTATGATCACCTCACCCCAGCTGAGAGGCGTTACATGGAGCAGAAGCAG
AAGATTGACATGCATAAGCTAGCCAAAGTAGCCAACAAGTCACACAGGGACCGCATCCAGGACTTCAACCAATACCTGGC
AAATCTTAGCGAGCACTACGACATCCCAAAAGTTGGCCCTGGTTAACTTTGCCTATTCAGAGCTTCGCAGGAATGCTTCC
TATGCTGTACCCATCCAGCCATCTGTTAGCTTGTGATGCTCCTACCTGTATTGTTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis