Browse Element(s) Details


Os.52768.1.S1_at

Description gb:AK069154.1
DB_XREF= gi:32979178
TID=Os.52768.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52768 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023006P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023006P21, full insert sequence.
FL= gb:AK069154.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g495109/11amino acid transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49480Os.52592.1.S1_at11/112+30227417..30229842Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g49490OsAffx.22947.1.S1_x_at8/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.2.S1_x_at4/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.3.S1_x_at2/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.5.S1_x_at1/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49500NANA2+30248718..30250587hypothetical protein
LOC_Os02g49510Os.52768.1.S1_at9/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.18333.1.S1_at6/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.22086.1.S1_x_at2/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49520Os.50290.1.S1_at11/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.9217.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.21372.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49530Os.11268.1.S1_at11/112+30270583..30273419expressed protein
LOC_Os02g49540OsAffx.3011.1.S1_at11/112+30275432..30275795hypothetical protein
LOC_Os02g49550OsAffx.3012.1.S1_at11/112+30276615..30277550Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52768.1.S1_at--1084--211Chr02:30255904..30255928 (25 bp)
ATTTGGGACGCGTTCCAGTTCACTG
LOC_Os02g49510
Os.52768.1.S1_at--1159--151Chr02:30255850..30255874 (25 bp)
ATTTTCCCTGCTGGAATGGCACTGA
LOC_Os02g49510
Os.52768.1.S1_at--1069--8231NONE
GGCACTGAGGGATCGCCACGGCATA
NONE
Os.52768.1.S1_at--1024--4091Chr02:30254159..30254183 (25 bp)
CGACAAGTATCTCGCGGTGTTCATG
LOC_Os02g49510
Os.52768.1.S1_at--207--8091Chr02:30254079..30254103 (25 bp)
GGACGTTTTAGTTGGCGATCGCACA
LOC_Os02g49510
Os.52768.1.S1_at--480--3811Chr02:30254053..30254077 (25 bp)
CTCCGTGGTGATCTGTGCATTAGTT
LOC_Os02g49510
Os.52768.1.S1_at--907--91Chr02:30254013..30254037 (25 bp)
ATTCGTTGTTTGCACGTTGAACTCA
LOC_Os02g49510
Os.52768.1.S1_at--820--7031Chr02:30253954..30253978 (25 bp)
GTACAAATTGCCTGCAGGTTCTGCA
LOC_Os02g49510
Os.52768.1.S1_at--297--8751Chr02:30253874..30253898 (25 bp)
TGTAGACCTTTTCTTGTTACTGACA
LOC_Os02g49510
Os.52768.1.S1_at--1007--6931Chr02:30253752..30253776 (25 bp)
GTAGTTGGCATTTCTTTTACGTAAG
LOC_Os02g49510
Os.52768.1.S1_at--282--211Chr02:30253710..30253734 (25 bp)
ATATTCAGATGGTGCTTTCCTGACG
NONE
Target Sequence 
ATTTGGGACGCGTTCCAGTTCACTGGCGCCACTGCCGCCGTCGCCATTGCCTACATTTTCCCTGCTGGAATGGCACTGAG
GGATCGCCACGGCATAGCGACGAAGGGCGACAAGTATCTCGCGGTGTTCATGATTGTTCTTGCTTTGGTGGCAAATGGAG
TGGCCGTGTACAGCGACGCTTGCTTGGGGACGTTTTAGTTGGCGATCGCACATCTCCGTGGTGATCTGTGCATTAGTTAG
TGCGATATGAAAAATTCGTTGTTTGCACGTTGAACTCAACCATTTTGAGTTCCATTTATAATAAGTACATATGTACAAAT
TGCCTGCAGGTTCTGCAGAGATAGGTGTAGATAAGAATGCAGCGGTGAAAAAAAAATTCTAAACCGTGAATTTGTAGACC
TTTTCTTGTTACTGACAAATTGGTTGTTCTATACATGTCCAAACGGTACTGGACAAGAACTGATCAGTTCATGTTGATTT
TGGTGATAATTAAAGTCACTGGGATTCGATTGGTGTAGTTGGCATTTCTTTTACGTAAGGTAGTCTGCATAATCAGATAT
TCAGATGGTGCTTTCCTGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis