Browse Element(s) Details


Os.52592.1.S1_at

Description gb:AK068228.1
DB_XREF= gi:32978246
TID=Os.52592.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013148L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013148L19, full insert sequence.
FL= gb:AK068228.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4948011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49440Os.4185.1.A1_at11/112+30201095..30202434Dof domain, zinc finger family protein, expressed
LOC_Os02g49450Os.49597.1.S1_at11/112+30214661..30218042BSD domain containing protein, expressed
LOC_Os02g49460OsAffx.12565.1.S1_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49460Os.18003.1.S1_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49460Os.18003.1.S1_s_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49470Os.51896.1.S1_at3/112+30226173..30226856tic20 protein, putative, expressed
LOC_Os02g49480Os.52592.1.S1_at11/112+30227417..30229842Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g49490OsAffx.22947.1.S1_x_at8/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.2.S1_x_at4/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.3.S1_x_at2/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.5.S1_x_at1/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49500NANA2+30248718..30250587hypothetical protein
LOC_Os02g49510Os.52768.1.S1_at9/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.18333.1.S1_at6/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.22086.1.S1_x_at2/112+30253710..30257580amino acid transporter family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52592.1.S1_at--790--10251Chr02:30228068..30228092 (25 bp)
TTTGTCACCATCCACACAGGACATG
LOC_Os02g49480
Os.52592.1.S1_at--741--5491Chr02:30228037..30228061 (25 bp)
GAACAGTACGGTCCCAAGCACATAT
LOC_Os02g49480
Os.52592.1.S1_at--966--7391Chr02:30227979..30228003 (25 bp)
GTGTAACCAGTACAACCACCAGTTC
LOC_Os02g49480
Os.52592.1.S1_at--677--1691Chr02:30227808..30227832 (25 bp)
AGCCACCATGGCTGAGCATGTCAAC
LOC_Os02g49480
Os.52592.1.S1_at--755--3191Chr02:30227784..30227808 (25 bp)
CAATGCGCCAAGAGTCTGAACCAGG
LOC_Os02g49480
Os.52592.1.S1_at--1093--5971Chr02:30227737..30227761 (25 bp)
GAGAAACAGACCCTTCACGATGAAA
LOC_Os02g49480
Os.52592.1.S1_at--1156--6871Chr02:30227706..30227730 (25 bp)
GTATTTCTAGCGCTTACTCTCAAGG
LOC_Os02g49480
Os.52592.1.S1_at--197--9731Chr02:30227687..30227711 (25 bp)
TCAAGGGTCTGTTCCTTAACCATTT
LOC_Os02g49480
Os.52592.1.S1_at--351--2131Chr02:30227625..30227649 (25 bp)
ACAGGATACTACTTCAATTTGCAAC
LOC_Os02g49480
Os.52592.1.S1_at--906--7111Chr02:30227565..30227589 (25 bp)
GTCAGGACTAGATCCATCTCAAGCT
LOC_Os02g49480
Os.52592.1.S1_at--895--1611Chr02:30227535..30227559 (25 bp)
AGCTGTAGAGATCAACCTGGCCAAA
LOC_Os02g49480
Target Sequence 
TTTGTCACCATCCACACAGGACATGAACAACGAACAGTACGGTCCCAAGCACATATCGGCAGCACAACCTGCTCTCTTCA
ACACACAGAGTGTAACCAGTACAACCACCAGTTCCTCCCACATGGCAACAGGCACACCACAAAATTTGGAAAAGAACAGC
ACACCCAGCAATCAGCCACCATGGCTGAGCATGTCAACAATGCGCCAAGAGTCTGAACCAGGCAACAAAATGCCGAACAA
GCATGAGAAACAGACCCTTCACGATGAAAACCATAGTATTTCTAGCGCTTACTCTCAAGGGTCTGTTCCTTAACCATTTG
TTACTTCAAGACTAAAGTTAGCACAATATGTAACTAACAGGATACTACTTCAATTTGCAACAGATTATTCAACAGATTGA
CAGAAGCTCTTAAAAAGTCAGGACTAGATCCATCTCAAGCTAATATAGCTGTAGAGATCAACCTGGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis