Browse Element(s) Details


OsAffx.12565.1.S1_at

Description tigr:9630.m04842
TID=OsAffx.12565.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plant protein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4946011/11Auxin-independent growth promoter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49430OsAffx.3010.1.S1_at11/112+30197670..30198131hypothetical protein
LOC_Os02g49440Os.4185.1.A1_at11/112+30201095..30202434Dof domain, zinc finger family protein, expressed
LOC_Os02g49450Os.49597.1.S1_at11/112+30214661..30218042BSD domain containing protein, expressed
LOC_Os02g49460OsAffx.12565.1.S1_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49460Os.18003.1.S1_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49460Os.18003.1.S1_s_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49470Os.51896.1.S1_at3/112+30226173..30226856tic20 protein, putative, expressed
LOC_Os02g49480Os.52592.1.S1_at11/112+30227417..30229842Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g49490OsAffx.22947.1.S1_x_at8/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.2.S1_x_at4/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.3.S1_x_at2/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.5.S1_x_at1/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49500NANA2+30248718..30250587hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12565.1.S1_at--433--971Chr02:30223658..30223682 (25 bp)
AGGAGACACTTTTGCAACCTTCCGA
LOC_Os02g49460
OsAffx.12565.1.S1_at--632--9011Chr02:30223670..30223694 (25 bp)
TGCAACCTTCCGATCTCATGTTCTT
LOC_Os02g49460
OsAffx.12565.1.S1_at--1153--91Chr02:30223703..30223727 (25 bp)
ATTCGTCACAAATGGCAGCTCTGGA
LOC_Os02g49460
OsAffx.12565.1.S1_at--848--851Chr02:30223714..30223738 (25 bp)
ATGGCAGCTCTGGATTACTTGGTAT
LOC_Os02g49460
OsAffx.12565.1.S1_at--431--3911Chr02:30223723..30223747 (25 bp)
CTGGATTACTTGGTATCACTGGAAA
LOC_Os02g49460
OsAffx.12565.1.S1_at--543--5571Chr02:30223744..30223768 (25 bp)
GAAAGTGATATATTTGTTCCAACAT
LOC_Os02g49460
OsAffx.12565.1.S1_at--783--3691Chr02:30224067..30224091 (25 bp)
CTATGCTGTGGGATGAATTCTCTTC
LOC_Os02g49460
OsAffx.12565.1.S1_at--493--5211Chr02:30224081..30224105 (25 bp)
GAATTCTCTTCACTAATCAAGTCTG
LOC_Os02g49460
OsAffx.12565.1.S1_at--1093--1831Chr02:30224109..30224133 (25 bp)
ACGCAAACCGAATGGGAGCAGCTTC
LOC_Os02g49460
OsAffx.12565.1.S1_at--330--5931Chr02:30224124..30224148 (25 bp)
GAGCAGCTTCAAAAAGGACAGTGAT
LOC_Os02g49460
OsAffx.12565.1.S1_at--1038--6511Chr02:30224232..30224256 (25 bp)
GATATTTTTAATAGCGCAATTGCGC
LOC_Os02g49460
Target Sequence 
AGGAGACACTTTTGCAACCTTCCGATCTCATGTTCTTCCAGAACCATTCGTCACAAATGGCAGCTCTGGATTACTTGGTA
TCACTGGAAAGTGATATATTTGTTCCAACATATGATGGTAATATGGCTAAAGTTGTTGAGGGACACCGCAGGTTCATGGG
TTTTAAGAAAACAATCTTATTGGATCGAAAACTCATTGTTGAGCTGGTCGACCAGTATAATAGTGGTTCTATGCTGTGGG
ATGAATTCTCTTCACTAATCAAGTCTGTCCACGCAAACCGAATGGGAGCAGCTTCAAAAAGGACAGTGATTCATGACAAA
CCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAGTGCTTGCGAGATCCCAATCTTTTACGGACATCATGATATTT
TTAATAGCGCAATTGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis