Browse Element(s) Details


Os.49597.1.S1_at

Description gb:AK101892.1
DB_XREF= gi:32987101
TID=Os.49597.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070O19, full insert sequence.
FL= gb:AK101892.1 gb:AK107913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4945011/11BSD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49420Os.53492.1.S1_at11/112+30192724..30193979Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os02g49430OsAffx.3010.1.S1_at11/112+30197670..30198131hypothetical protein
LOC_Os02g49440Os.4185.1.A1_at11/112+30201095..30202434Dof domain, zinc finger family protein, expressed
LOC_Os02g49450Os.49597.1.S1_at11/112+30214661..30218042BSD domain containing protein, expressed
LOC_Os02g49460OsAffx.12565.1.S1_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49460Os.18003.1.S1_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49460Os.18003.1.S1_s_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49470Os.51896.1.S1_at3/112+30226173..30226856tic20 protein, putative, expressed
LOC_Os02g49480Os.52592.1.S1_at11/112+30227417..30229842Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g49490OsAffx.22947.1.S1_x_at8/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.2.S1_x_at4/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.3.S1_x_at2/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.5.S1_x_at1/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49597.1.S1_at--12--6011Chr02:30217162..30217186 (25 bp)
GAGACCTCACAAGCTACAACTGCAG
LOC_Os02g49450
Os.49597.1.S1_at--1013--10371Chr02:30217253..30217277 (25 bp)
TTTTCCTTCTGGGAGATCTAGGCAG
LOC_Os02g49450
Os.49597.1.S1_at--1013--6491Chr02:30217429..30217715 (25 bp)
GATAGATGGCACTTCAGGCTTAGAG
LOC_Os02g49450
Os.49597.1.S1_at--157--3631Chr02:30217776..30217800 (25 bp)
CTTGCAGAGCTGGTGATCAATATGA
LOC_Os02g49450
Os.49597.1.S1_at--99--6511Chr02:30217799..30217823 (25 bp)
GATATGAAGTGCTTTCCCAGATCTA
LOC_Os02g49450
Os.49597.1.S1_at--885--10291Chr02:30217811..30217835 (25 bp)
TTTCCCAGATCTACACATGCTTATC
LOC_Os02g49450
Os.49597.1.S1_at--795--4891Chr02:30217829..30217853 (25 bp)
GCTTATCATGACAACGAAGGCTCTA
LOC_Os02g49450
Os.49597.1.S1_at--1069--5291Chr02:30217844..30217868 (25 bp)
GAAGGCTCTAGCACGCAGCTTACTG
LOC_Os02g49450
Os.49597.1.S1_at--596--5111Chr02:30217868..30217892 (25 bp)
GCACTAGTCCAGCTGCTATTGTATA
LOC_Os02g49450
Os.49597.1.S1_at--644--7911Chr02:30217899..30217923 (25 bp)
GGTTGCATCTATCCATTCATTTTTC
LOC_Os02g49450
Os.49597.1.S1_at--363--5871Chr02:30218005..30218029 (25 bp)
GAGCCATCTAGGGTGCTTTGCATAT
LOC_Os02g49450
Target Sequence 
GAGACCTCACAAGCTACAACTGCAGAACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACNAATCCAGAGCA
TGATTTGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGATGAGGGTCCTGATGGTGATGATGATGGGTTAGATGATG
ACTTCGATAAGATAGATGGCACTTCAGGCTTAGAGAGTGATGATGATGATGACAAGGAAAAAGCAGCAGGCAAGGCAGAA
AGTGCAAAGGAGTAGCTTGCAGAGCTGGTGATCAATATGATATGAAGTGCTTTCCCAGATCTACACATGCTTATCATGAC
AACGAAGGCTCTAGCACGCAGCTTACTGCACTAGTCCAGCTGCTATTGTATAATAGATGGTTGCATCTATCCATTCATTT
TTCTCCCNCTGAAGCNATGCTGCTNTCGTNGTTGCATTTTTCTNGTCCNAGATTTANAANGCTCTNTTGTNTTTCCGNNT
TCTGGAGCCATCTAGGGTGCTTTGCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis