Browse Element(s) Details


Os.51896.1.S1_at

Description gb:AK064213.1
DB_XREF= gi:32974231
TID=Os.51896.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-F03, full insert sequence.
FL= gb:AK064213.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g494703/11tic20 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49440Os.4185.1.A1_at11/112+30201095..30202434Dof domain, zinc finger family protein, expressed
LOC_Os02g49450Os.49597.1.S1_at11/112+30214661..30218042BSD domain containing protein, expressed
LOC_Os02g49460OsAffx.12565.1.S1_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49460Os.18003.1.S1_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49460Os.18003.1.S1_s_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49470Os.51896.1.S1_at3/112+30226173..30226856tic20 protein, putative, expressed
LOC_Os02g49480Os.52592.1.S1_at11/112+30227417..30229842Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g49490OsAffx.22947.1.S1_x_at8/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.2.S1_x_at4/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.3.S1_x_at2/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.5.S1_x_at1/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49500NANA2+30248718..30250587hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51896.1.S1_at--1071--7191Chr02:30226581..30226605 (25 bp)
GTCGTGCGCAACCAGCAGGCCTTCT
LOC_Os02g49470
Os.51896.1.S1_at--320--9091Chr02:30226759..30226783 (25 bp)
TGCTCGTCTGCCTAGTCTACGGCGG
LOC_Os02g49470
Os.51896.1.S1_at--264--9211Chr02:30226816..30226840 (25 bp)
TGCCAATCGTCGCAGATGCAGCCGA
LOC_Os02g49470
Os.51896.1.S1_at--1024--4551Chr02:30226841..30226865 (25 bp)
GCGCCAGGTGATGTGATGAGCTTTT
NONE
Os.51896.1.S1_at--16--5931Chr02:30226858..30226882 (25 bp)
GAGCTTTTGTCAAATCTTGCTGGTG
NONE
Os.51896.1.S1_at--489--2291Chr02:30226898..30226922 (25 bp)
AAATGATATACACATCCATCTCGAT
NONE
Os.51896.1.S1_at--158--471Chr02:30226915..30226939 (25 bp)
ATCTCGATGCCTCATTGATGTTAGT
NONE
Os.51896.1.S1_at--341--6951Chr02:30226938..30226962 (25 bp)
GTAGATCGCAAATTCACAAGTTCAG
NONE
Os.51896.1.S1_at--351--2151Chr02:30226982..30227006 (25 bp)
ACAGCTGTAGTAACCAATTTAATGA
NONE
Os.51896.1.S1_at--377--3951Chr02:30227016..30227040 (25 bp)
CGGAAGGTTGGTACAATGGCATTAC
NONE
Os.51896.1.S1_at--548--10031Chr02:30227089..30227113 (25 bp)
TAGAGATAGCAATACATATACTCGC
NONE
Target Sequence 
GTCGTGCGCAACCAGCAGGCCTTCTCCCGCTTCGTCCGCTTCAACGCCATGCAGGCCGTCGCGCTCGACGTGCTGCTCAT
CTTCCCCGACCTCCTCGTGCAGTCCTTCGCGCCCTCCACCGGTGGCGGGATCGGCTTCGAGCTCTTCCAGAGNTATGGAG
AGCACCGNGTTNCCTCTTCCTGCTCGTCTGCCTAGTCTACGGCGGGGGCGCGTGCCTGCTAGGGAAGACGCCGNCGGCTG
CCAATCGTCGCAGATGCAGCCGAGCGCCAGGTGATGTGATGAGCTTTTGTCAAATCTTGCTGGTGAAAAGGAACAAAGGA
AAATGATATACACATCCATCTCGATGCCTCATTGATGTTAGTAGATCGCAAATTCACAAGTTCAGTTTAGTACAGTGATT
ATTTACAGCTGTAGTAACCAATTTAATGAATGGAGTTACGGAAGGTTGGTACAATGGCATTACAAAATTTACAATCAAGT
GTATGAACGAATGAGTTGAATTGGGAATTTTTAGAGATAGCAATACATATACTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis