Browse Element(s) Details


Os.18003.1.S1_s_at

Description gb:CB096858
DB_XREF= gi:27921050
DB_XREF=AF53-Rpf_09_I04_T7_006.ab1
CLONE=C0003268
TID=Os.18003.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18003 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T51403 (A.thaliana) T51403 hypothetical protein F14F8_120 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4946011/11Auxin-independent growth promoter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49430OsAffx.3010.1.S1_at11/112+30197670..30198131hypothetical protein
LOC_Os02g49440Os.4185.1.A1_at11/112+30201095..30202434Dof domain, zinc finger family protein, expressed
LOC_Os02g49450Os.49597.1.S1_at11/112+30214661..30218042BSD domain containing protein, expressed
LOC_Os02g49460OsAffx.12565.1.S1_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49460Os.18003.1.S1_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49460Os.18003.1.S1_s_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49470Os.51896.1.S1_at3/112+30226173..30226856tic20 protein, putative, expressed
LOC_Os02g49480Os.52592.1.S1_at11/112+30227417..30229842Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g49490OsAffx.22947.1.S1_x_at8/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.2.S1_x_at4/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.3.S1_x_at2/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.5.S1_x_at1/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49500NANA2+30248718..30250587hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18003.1.S1_s_at--296--9551Chr02:30224013..30224037 (25 bp)
TCTTATTGGATCGAAAACTCATTGT
LOC_Os02g49460
Os.18003.1.S1_s_at--978--2531Chr02:30224028..30224052 (25 bp)
AACTCATTGTTGAGCTGGTCGACCA
LOC_Os02g49460
Os.18003.1.S1_s_at--1141--31Chr02:30224033..30224057 (25 bp)
ATTGTTGAGCTGGTCGACCAGTATA
LOC_Os02g49460
Os.18003.1.S1_s_at--41--6571Chr02:30224146..30224170 (25 bp)
GATTCATGACAAACCGAAGGAAGAG
LOC_Os02g49460
Os.18003.1.S1_s_at--510--10111Chr02:30224180..30224204 (25 bp)
TATGCTAACCCTCAAGAGTGCTTGC
LOC_Os02g49460
Os.18003.1.S1_s_at--228--9731Chr02:30224191..30224215 (25 bp)
TCAAGAGTGCTTGCGAGATCCCAAT
LOC_Os02g49460
Os.18003.1.S1_s_at--17--11Chr02:30224263..30224287 (25 bp)
ACTTATTACCATTACACGTTTACAG
LOC_Os02g49460
Os.18003.1.S1_s_at--304--3591Chr02:30224272..30224296 (25 bp)
CATTACACGTTTACAGCATAGCTGA
LOC_Os02g49460
Os.18003.1.S1_s_at--813--8771Chr02:30224300..30224324 (25 bp)
TGTTTCTTCCGAGCTGACTCAAATG
LOC_Os02g49460
Os.18003.1.S1_s_at--252--1591Chr02:30224311..30224335 (25 bp)
AGCTGACTCAAATGGCTCGGCATTT
LOC_Os02g49460
Os.18003.1.S1_s_at--909--6051Chr02:30224371..30224395 (25 bp)
GAGTTTGGATGGAAGCTGAAAGAAA
LOC_Os02g49460
Target Sequence 
TCTTATTGGATCGAAAACTCATTGTTGAGCTGGTCGACCAGTATAANAGTGGTTCTNTNCTGTGGNATGAATTCTNTNCN
NNAATCAAGTCTGTCCACGCAANCCGAATGGNNGCAGCTTCANAAAGNACANTGATTCATGACAAACCGAAGGAAGAGGA
CTANTTNTATGCTAACCCTCAAGAGTGCTTGCGAGATCCCAATNTTTTACGGACATCATGATATTTNTANTAGCGCNATT
GCGCGAGNATACTTATTACCATTACACGTTTACAGCATAGCTGAACNTGTTTCTTCCGAGCTGACTCAAATGGCTCGGCA
TTTTCAGTTCAGAACTTCNGGTTGGNCCATTGACAAGGGAGTTTGGATGGAAGCTGAAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18003.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis