Browse Element(s) Details


OsAffx.3010.1.S1_at

Description tigr:9630.m04839
TID=OsAffx.3010.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4943011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49390NANA2+30170408..30176634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49400Os.47463.1.S1_x_at2/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49400Os.14491.2.S1_x_at2/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49400OsAffx.9860.1.S1_x_at1/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49410Os.57554.1.A1_at9/112+30185616..30186620CCAAT-binding transcription factor subunit NF-YB1, putative, expressed
LOC_Os02g49420Os.53492.1.S1_at11/112+30192724..30193979Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os02g49430OsAffx.3010.1.S1_at11/112+30197670..30198131hypothetical protein
LOC_Os02g49440Os.4185.1.A1_at11/112+30201095..30202434Dof domain, zinc finger family protein, expressed
LOC_Os02g49450Os.49597.1.S1_at11/112+30214661..30218042BSD domain containing protein, expressed
LOC_Os02g49460OsAffx.12565.1.S1_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49460Os.18003.1.S1_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed
LOC_Os02g49460Os.18003.1.S1_s_at11/112+30221069..30224644Auxin-independent growth promoter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3010.1.S1_at--778--2011Chr02:30197700..30197724 (25 bp)
ACTCACATGTGGGTTCATTTGCCTC
LOC_Os02g49430
OsAffx.3010.1.S1_at--718--7891Chr02:30197711..30197735 (25 bp)
GGTTCATTTGCCTCCGCATAATTCT
LOC_Os02g49430
OsAffx.3010.1.S1_at--8--10291Chr02:30197717..30197741 (25 bp)
TTTGCCTCCGCATAATTCTGTCAAG
LOC_Os02g49430
OsAffx.3010.1.S1_at--274--4971Chr02:30197726..30197750 (25 bp)
GCATAATTCTGTCAAGCCCATTTCG
LOC_Os02g49430
OsAffx.3010.1.S1_at--666--10591Chr02:30197732..30197756 (25 bp)
TTCTGTCAAGCCCATTTCGTATAAA
LOC_Os02g49430
OsAffx.3010.1.S1_at--940--9371Chr02:30197748..30197772 (25 bp)
TCGTATAAATGCACGCCATCCACAG
LOC_Os02g49430
OsAffx.3010.1.S1_at--73--9851Chr02:30197753..30197777 (25 bp)
TAAATGCACGCCATCCACAGTGTTC
LOC_Os02g49430
OsAffx.3010.1.S1_at--651--2131Chr02:30197769..30198048 (25 bp)
ACAGTGTTCCTGACACCTGCCAGCT
LOC_Os02g49430
OsAffx.3010.1.S1_at--365--5631Chr02:30198039..30198059 (21 bp)
GACACCTGCCAGCTACAGAGCAACT
LOC_Os02g49430
OsAffx.3010.1.S1_at--371--9871Chr02:30198048..30198072 (25 bp)
TACAGAGCAACTACCAGTGGCGACT
LOC_Os02g49430
OsAffx.3010.1.S1_at--421--2031Chr02:30198057..30198081 (25 bp)
ACTACCAGTGGCGACTGGCGCTGCG
LOC_Os02g49430
Target Sequence 
ACTCACATGTGGGTTCATTTGCCTCCGCATAATTCTGTCAAGCCCATTTCGTATAAATGCACGCCATCCACAGTGTTCCT
GACACCTGCCAGCTACAGAGCAACTACCAGTGGCGACTGGCGCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis