Browse Element(s) Details


Os.57554.1.A1_at

Description gb:AJ300218.1
DB_XREF= gi:13928059
GEN=nf-yb1
TID=Os.57554.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57554 (NCBI UniGene Cluster)
DEF=Oryza sativa nf-yb1 gene and nf-YB1 gene,.
PROD=NF-YB1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g494109/11CCAAT-binding transcription factor subunit NF-YB1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49380NANA2+30163597..30166399hypothetical protein
LOC_Os02g49390NANA2+30170408..30176634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49400Os.47463.1.S1_x_at2/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49400Os.14491.2.S1_x_at2/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49400OsAffx.9860.1.S1_x_at1/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49410Os.57554.1.A1_at9/112+30185616..30186620CCAAT-binding transcription factor subunit NF-YB1, putative, expressed
LOC_Os02g49420Os.53492.1.S1_at11/112+30192724..30193979Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os02g49430OsAffx.3010.1.S1_at11/112+30197670..30198131hypothetical protein
LOC_Os02g49440Os.4185.1.A1_at11/112+30201095..30202434Dof domain, zinc finger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0045449biological_processregulation of transcription
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57554.1.A1_at--225--8191Chr02:30186124..30186148 (25 bp)
GGAAGACTACTTGGGCTCATTCGGC
LOC_Os02g49410
Os.57554.1.A1_at--1059--571Chr02:30186065..30186089 (25 bp)
ATGCCTACATCCATGGTTACCGTGA
LOC_Os02g49410
Os.57554.1.A1_at--685--8531NONE
TGGACCGACATTCACCGACGCAGAG
NONE
Os.57554.1.A1_at--680--1591Chr02:30185945..30185969 (25 bp)
AGCTGCAGTTTCTCCGGTCGGTGAT
LOC_Os02g49410
Os.57554.1.A1_at--1162--5211Chr02:30185901..30185925 (25 bp)
GAATATAGCGGCTCATCACCAGCCA
LOC_Os02g49410
Os.57554.1.A1_at--740--8671Chr02:30185815..30185839 (25 bp)
TGTGTGTACACTGCATGCATGCGTG
LOC_Os02g49410
Os.57554.1.A1_at--249--4991Chr02:30185803..30185827 (25 bp)
GCATGCATGCGTGGAGGGTCAAACA
LOC_Os02g49410
Os.57554.1.A1_at--116--7091NONE
GTCAAGACTCTTGTGGTGGTGTCAA
NONE
Os.57554.1.A1_at--1145--10811Chr02:30185728..30185752 (25 bp)
TTGTGTATCGTTGTTTCCTTTGTAA
LOC_Os02g49410
Os.57554.1.A1_at--137--4031Chr02:30185696..30185720 (25 bp)
CGTCATGTATCGTTGTGTGTCCTCA
LOC_Os02g49410
Os.57554.1.A1_at--429--9511Chr02:30185674..30185698 (25 bp)
TCATCCGGTAATCCTTTACGTGGGT
LOC_Os02g49410
Target Sequence 
GGAAGACTACTTGGGCTCATTCGGCGACCTTGGCTTCGATCGCTACGTCGACCCCATGGATGCCTACATCCATGGTTACC
GTGAGTTTGAGAGGGCTGGTGGGAATAGGAGGGTGGCGCCGCCTCCTCCGGCGGCAGCTACACCGCTGACGCCCGGTGGA
CCGACATTCACCGACGCAGAGCTGCAGTTTCTCCGGTCGGTGATCCCCTCCAGAAGTGATGATGAATATAGCGGCTCATC
ACCAGCCATAGGCGGCTATGGCTATGGATATGGCTATGGCAAAAATATGTGAACAACTTGATGCATGTGTGTGTGTACAC
TGCATGCATGCGTGGAGGGTCAAACAGAGTCAAGACTCTTGTGGTGGTGTCAATAAGTCTCTAGTGACAATATAAGTTGT
GTATCGTTGTTTCCTTTGTAAAAAAAACGTCATGTATCGTTGTGTGTCCTCATCCGGTAATCCTTTACGTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57554.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis