Browse Element(s) Details


Os.53492.1.S1_at

Description gb:AK099178.1
DB_XREF= gi:32984387
TID=Os.53492.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53492 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023096L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023096L20, full insert sequence.
FL= gb:AK099178.1 gb:AK072936.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4942011/11Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49390NANA2+30170408..30176634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49400Os.47463.1.S1_x_at2/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49400Os.14491.2.S1_x_at2/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49400OsAffx.9860.1.S1_x_at1/112+30178061..30185110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g49410Os.57554.1.A1_at9/112+30185616..30186620CCAAT-binding transcription factor subunit NF-YB1, putative, expressed
LOC_Os02g49420Os.53492.1.S1_at11/112+30192724..30193979Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os02g49430OsAffx.3010.1.S1_at11/112+30197670..30198131hypothetical protein
LOC_Os02g49440Os.4185.1.A1_at11/112+30201095..30202434Dof domain, zinc finger family protein, expressed
LOC_Os02g49450Os.49597.1.S1_at11/112+30214661..30218042BSD domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53492.1.S1_at--205--8031Chr02:30193295..30193319 (25 bp)
GGAGTCGAAGCCCAACTCTACGGAC
LOC_Os02g49420
Os.53492.1.S1_at--982--1911Chr02:30193257..30193281 (25 bp)
ACGGGCCGCCGAATGCTGGTGCACA
LOC_Os02g49420
Os.53492.1.S1_at--69--10651Chr02:30193099..30193123 (25 bp)
TTCGCTCTGGCGTTTCTCATGGCTG
LOC_Os02g49420
Os.53492.1.S1_at--129--1131Chr02:30193072..30193096 (25 bp)
AGTGCCATCCTCGTGGTGAATTGGT
LOC_Os02g49420
Os.53492.1.S1_at--1114--1231Chr02:30193029..30193053 (25 bp)
AGTTGATCACCAACGTTGTCTTGTG
LOC_Os02g49420
Os.53492.1.S1_at--201--5231Chr02:30192989..30193013 (25 bp)
GAATTTGCACGTTTCTGTGCCACTT
LOC_Os02g49420
Os.53492.1.S1_at--1072--8871Chr02:30192949..30192973 (25 bp)
TGAGTTTTTCCACTGTTAGGTACCT
LOC_Os02g49420
Os.53492.1.S1_at--131--1031Chr02:30192932..30192956 (25 bp)
AGGTACCTTAGGTTCATGGTGCATT
LOC_Os02g49420
Os.53492.1.S1_at--1010--6931Chr02:30192869..30192893 (25 bp)
GTAGTACCATTTTGTGTCGTCAACT
LOC_Os02g49420
Os.53492.1.S1_at--613--5091Chr02:30192838..30192862 (25 bp)
GCACGCGAACGTATGATCATTCATC
LOC_Os02g49420
Os.53492.1.S1_at--203--131Chr02:30192820..30192844 (25 bp)
ATTCATCAGCTGTATTCTGAGTCCA
LOC_Os02g49420
Target Sequence 
GGAGTCGAAGCCCAACTCTACGGACGCCTCGTCCAAGCACGGGCCGCCGAATGCTGGTGCACACGCTGCACCGTCGCCGG
TGGGGCAAGGTTCGTCGTCCGACGACGGCGCCGACGAGGGGAAGAAATCCGGCGACGGAGGAGATGGTGGCAAGAAGAAC
GGCGCCAGCGTCGGCGCGGCACCGCGTGGGCTACCCTTCGCTCTGGCGTTTCTCATGGCTGCCAGTGCCATCCTCGTGGT
GAATTGGTGATCGTGTGAAACTGTGAAGTTGATCACCAACGTTGTCTTGTGAAATTCATTTTGGGTGAATTTGCACGTTT
CTGTGCCACTTTTGTTGGGGATTTCGTGAGTTTTTCCACTGTTAGGTACCTTAGGTTCATGGTGCATTGGTGCTTGGAAA
TGTGTTGAATTGTGGTTTGCAAGTTAGTAGTACCATTTTGTGTCGTCAACTTAATTNGCACGCGAACGTATGATCATTCA
TCAGCTGTATTCTGAGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis