Browse Element(s) Details


OsAffx.3011.1.S1_at

Description tigr:9630.m04850
TID=OsAffx.3011.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4954011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49500NANA2+30248718..30250587hypothetical protein
LOC_Os02g49510Os.52768.1.S1_at9/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.18333.1.S1_at6/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.22086.1.S1_x_at2/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49520Os.50290.1.S1_at11/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.9217.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.21372.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49530Os.11268.1.S1_at11/112+30270583..30273419expressed protein
LOC_Os02g49540OsAffx.3011.1.S1_at11/112+30275432..30275795hypothetical protein
LOC_Os02g49550OsAffx.3012.1.S1_at11/112+30276615..30277550Zinc finger, C3HC4 type family protein
LOC_Os02g49560OsAffx.12566.1.S1_at11/112+30289740..30290249bZIP transcription factor family protein, expressed
LOC_Os02g49570Os.14793.1.S1_at11/112+30291340..30300270Peptidase family U7 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3011.1.S1_at--32--431Chr02:30275738..30275762 (25 bp)
ATCATCGGCGCTCTTCTGCTCTCTT
LOC_Os02g49540
OsAffx.3011.1.S1_at--1001--4291Chr02:30275661..30275682 (22 bp)
CCTCAGGAGGAAAATGGATCAATTT
LOC_Os02g49540
OsAffx.3011.1.S1_at--554--6451Chr02:30275645..30275669 (25 bp)
GATCAATTTTGCAGCCATGGCGACG
LOC_Os02g49540
OsAffx.3011.1.S1_at--35--3411Chr02:30275573..30275597 (25 bp)
CAGAAGGGTGTATGACCCGCCGGAC
LOC_Os02g49540
OsAffx.3011.1.S1_at--139--8931Chr02:30275561..30275585 (25 bp)
TGACCCGCCGGACGAGAACTGCGAT
LOC_Os02g49540
OsAffx.3011.1.S1_at--926--5771Chr02:30275551..30275575 (25 bp)
GACGAGAACTGCGATCCGGACTCAT
LOC_Os02g49540
OsAffx.3011.1.S1_at--482--4631Chr02:30275541..30275565 (25 bp)
GCGATCCGGACTCATGCAAGGCGAT
LOC_Os02g49540
OsAffx.3011.1.S1_at--323--8131Chr02:30275534..30275558 (25 bp)
GGACTCATGCAAGGCGATCTGCTCC
LOC_Os02g49540
OsAffx.3011.1.S1_at--315--9051Chr02:30275515..30275539 (25 bp)
TGCTCCCTCCGGTATAACGGCGTTG
LOC_Os02g49540
OsAffx.3011.1.S1_at--510--351Chr02:30275502..30275526 (25 bp)
ATAACGGCGTTGGTGTGTGCGATCC
LOC_Os02g49540
OsAffx.3011.1.S1_at--779--8691Chr02:30275487..30275511 (25 bp)
TGTGCGATCCTGTTGGCTGCCAATG
LOC_Os02g49540
Target Sequence 
ATCATCGGCGCTCTTCTGCTCTCTTCCTCAGGAGGAAAATGGATCAATTTTGCAGCCATGGCGACGACGGCGGAGGGTGG
CGGCGACGTCCCGCCGCCGGGCGGCGAAGCCTGCAGAAGGGTGTATGACCCGCCGGACGAGAACTGCGATCCGGACTCAT
GCAAGGCGATCTGCTCCCTCCGGTATAACGGCGTTGGTGTGTGCGATCCTGTTGGCTGCCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis