Browse Element(s) Details


OsAffx.12566.1.S1_at

Description tigr:9630.m04852
TID=OsAffx.12566.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=bZip transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4956011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49520Os.50290.1.S1_at11/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.9217.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.21372.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49530Os.11268.1.S1_at11/112+30270583..30273419expressed protein
LOC_Os02g49540OsAffx.3011.1.S1_at11/112+30275432..30275795hypothetical protein
LOC_Os02g49550OsAffx.3012.1.S1_at11/112+30276615..30277550Zinc finger, C3HC4 type family protein
LOC_Os02g49560OsAffx.12566.1.S1_at11/112+30289740..30290249bZIP transcription factor family protein, expressed
LOC_Os02g49570Os.14793.1.S1_at11/112+30291340..30300270Peptidase family U7 containing protein, expressed
LOC_Os02g49580NANA2+30302974..30303525expressed protein
LOC_Os02g49590OsAffx.3013.1.S1_at11/112+30304672..30307240ASC1-like protein 2, putative, expressed
LOC_Os02g49600Os.53695.1.S1_at11/112+30310272..30313936Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12566.1.S1_at--878--8931Chr02:30289826..30289850 (25 bp)
TGACTTCCTCCTCCAGTATAACAGT
LOC_Os02g49560
OsAffx.12566.1.S1_at--431--10611Chr02:30289852..30289876 (25 bp)
TTCTGGTGCCTCAAGCTACATCTTA
LOC_Os02g49560
OsAffx.12566.1.S1_at--883--2071Chr02:30289869..30289893 (25 bp)
ACATCTTACCAACATGTGGCACACC
LOC_Os02g49560
OsAffx.12566.1.S1_at--417--6311Chr02:30289947..30289971 (25 bp)
GATGACTATCAACGCAGTCTTGCAG
LOC_Os02g49560
OsAffx.12566.1.S1_at--597--3051Chr02:30290008..30290032 (25 bp)
AATCTGCCCGACGATCACGGATGAG
LOC_Os02g49560
OsAffx.12566.1.S1_at--923--8911Chr02:30290051..30290075 (25 bp)
TGAGCTCTGGGCACAGGTTGTCCAC
LOC_Os02g49560
OsAffx.12566.1.S1_at--1086--1491Chr02:30290082..30290106 (25 bp)
AGCACTAATCGTCAGCTCCTTGATC
LOC_Os02g49560
OsAffx.12566.1.S1_at--645--5431Chr02:30290111..30290135 (25 bp)
GAACCATGTCATCAGGGATTGCGAT
LOC_Os02g49560
OsAffx.12566.1.S1_at--431--1071Chr02:30290124..30290148 (25 bp)
AGGGATTGCGATCGTGTTACCCACG
LOC_Os02g49560
OsAffx.12566.1.S1_at--1158--10451Chr02:30290140..30290164 (25 bp)
TTACCCACGAAAACTGCCAGCTGAG
LOC_Os02g49560
OsAffx.12566.1.S1_at--459--1551Chr02:30290191..30290215 (25 bp)
AGCTTGAGAAGACCCCTGTAGAGAA
LOC_Os02g49560
Target Sequence 
TGACTTCCTCCTCCAGTATAACAGTCTTCTGGTGCCTCAAGCTACATCTTACCAACATGTGGCACACCTACCCCATGAAA
CCAACCTTCCAGTTGGAAATAAATCCAATTCAGATGAATCAGATGACTATCAACGCAGTCTTGCAGAAGAGCGCAGGAGG
AGAAGGATGATATCCAACAGGGAATCTGCCCGACGATCACGGATGAGGAAGCAGAAACAGCTAAGTGAGCTCTGGGCACA
GGTTGTCCACCTCCGCAGCACTAATCGTCAGCTCCTTGATCAGCTGAACCATGTCATCAGGGATTGCGATCGTGTTACCC
ACGAAAACTGCCAGCTGAGAGATGAACAAGCCAAACTGCAGAAGCAGCTTGAGAAGACCCCTGTAGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis