Browse Element(s) Details


OsAffx.3013.1.S1_at

Description tigr:9630.m04856
TID=OsAffx.3013.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Highly similar to fungal resistance protein Asc
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4959011/11ASC1-like protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49560OsAffx.12566.1.S1_at11/112+30289740..30290249bZIP transcription factor family protein, expressed
LOC_Os02g49570Os.14793.1.S1_at11/112+30291340..30300270Peptidase family U7 containing protein, expressed
LOC_Os02g49580NANA2+30302974..30303525expressed protein
LOC_Os02g49590OsAffx.3013.1.S1_at11/112+30304672..30307240ASC1-like protein 2, putative, expressed
LOC_Os02g49600Os.53695.1.S1_at11/112+30310272..30313936Leucine Rich Repeat family protein, expressed
LOC_Os02g49610Os.37523.1.S1_at11/112+30317371..30319797H/ACA ribonucleoprotein complex subunit 2, putative, expressed
LOC_Os02g49620Os.24692.1.A1_at11/112+30319915..30323596expressed protein
LOC_Os02g49630OsAffx.3014.1.S1_at11/112+30324133..30326791Tetraspanin family protein, expressed
LOC_Os02g49640Os.48262.1.A1_at1/112+30330462..30332974expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3013.1.S1_at--758--2351Chr02:30305751..30305775 (25 bp)
AAAGCGCTCAGATTTTGGTATTTCA
LOC_Os02g49590
OsAffx.3013.1.S1_at--431--131Chr02:30306528..30306549 (22 bp)
ATTCAGATTTGCTCGTGTGGGTTCA
LOC_Os02g49590
OsAffx.3013.1.S1_at--941--8651Chr02:30306540..30306564 (25 bp)
TGTGGGTTCAATTGTCCTTGCCATC
LOC_Os02g49590
OsAffx.3013.1.S1_at--304--6331Chr02:30306568..30306592 (25 bp)
GATGCAAGTGACGTATTCCTGGAAT
LOC_Os02g49590
OsAffx.3013.1.S1_at--615--1091Chr02:30306613..30306637 (25 bp)
AGTGGCTACCAGTTGCTTGCTGATG
LOC_Os02g49590
OsAffx.3013.1.S1_at--1112--9551Chr02:30306645..30306669 (25 bp)
TCTTATCTTTGTCTGTTCTTGGGCA
LOC_Os02g49590
OsAffx.3013.1.S1_at--69--1151Chr02:30306669..30306693 (25 bp)
AGTCCTTCGCCTGATATATTATCCA
LOC_Os02g49590
OsAffx.3013.1.S1_at--782--571Chr02:30306689..30306713 (25 bp)
ATCCATTCTGGATTCTCTGGAGCAC
LOC_Os02g49590
OsAffx.3013.1.S1_at--943--10771Chr02:30306863..30306887 (25 bp)
TTGATGGTCCACTACACTATTATGT
LOC_Os02g49590
OsAffx.3013.1.S1_at--1075--10111Chr02:30306883..30306907 (25 bp)
TATGTATTCAACTGTCTTCTCTTCT
LOC_Os02g49590
OsAffx.3013.1.S1_at--658--7691Chr02:30306935..30306959 (25 bp)
GGGTCTTAATGTATCGAATGCTCGT
LOC_Os02g49590
Target Sequence 
AAAGCGCTCAGATTTTGGTATTTCAATGGTTCATCATGTAGTATCTGTTATTCTCATAGCATTGTCTTACATATTCAGAT
TTGCTCGTGTGGGTTCAATTGTCCTTGCCATCCATGATGCAAGTGACGTATTCCTGGAATTGGGGAAGATTTCTAAGTAC
AGTGGCTACCAGTTGCTTGCTGATGTTTCATTTCTTATCTTTGTCTGTTCTTGGGCAGTCCTTCGCCTGATATATTATCC
ATTCTGGATTCTCTGGAGCACAAGCTATGAAGTTGTTCCGATGTTGGACAAGAAGAAGCATAAGTTTGATGGTCCACTAC
ACTATTATGTATTCAACTGTCTTCTCTTCTCCCTCCTTGTTCTAAACATATATTGGTGGGTCTTAATGTATCGAATGCTC
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis