Browse Element(s) Details


Os.24692.1.A1_at

Description gb:AK109840.1
DB_XREF= gi:32995049
TID=Os.24692.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-D12, full insert sequence.
FL= gb:AK109840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4962011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49570Os.14793.1.S1_at11/112+30291340..30300270Peptidase family U7 containing protein, expressed
LOC_Os02g49580NANA2+30302974..30303525expressed protein
LOC_Os02g49590OsAffx.3013.1.S1_at11/112+30304672..30307240ASC1-like protein 2, putative, expressed
LOC_Os02g49600Os.53695.1.S1_at11/112+30310272..30313936Leucine Rich Repeat family protein, expressed
LOC_Os02g49610Os.37523.1.S1_at11/112+30317371..30319797H/ACA ribonucleoprotein complex subunit 2, putative, expressed
LOC_Os02g49620Os.24692.1.A1_at11/112+30319915..30323596expressed protein
LOC_Os02g49630OsAffx.3014.1.S1_at11/112+30324133..30326791Tetraspanin family protein, expressed
LOC_Os02g49640Os.48262.1.A1_at1/112+30330462..30332974expressed protein
LOC_Os02g49650Os.19315.1.S1_s_at3/112+30334375..30338575hypothetical protein
LOC_Os02g49660OsAffx.12567.1.S1_at11/112+30340594..30341924expressed protein
LOC_Os02g49660OsAffx.12567.1.S1_x_at11/112+30340594..30341924expressed protein
LOC_Os02g49670OsAffx.3016.1.S1_x_at11/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49670Os.47935.1.S1_at10/112+30346830..30350609Zinc knuckle family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24692.1.A1_at--350--5551Chr02:30322595..30322619 (25 bp)
GAAACTGGAACAGCTGTTGGCTCTG
LOC_Os02g49620
Os.24692.1.A1_at--756--6611Chr02:30322610..30322634 (25 bp)
GTTGGCTCTGTATCTCTAGCTGCAA
LOC_Os02g49620
Os.24692.1.A1_at--19--1131Chr02:30323226..30323247 (22 bp)
AGTGAACTCGCGATGCTGCAGAGCA
LOC_Os02g49620
Os.24692.1.A1_at--907--991Chr02:30323268..30323292 (25 bp)
AGGATACAGCAGCTTCGTGCTCAAC
LOC_Os02g49620
Os.24692.1.A1_at--12--3031Chr02:30323311..30323335 (25 bp)
AATGCTGCCCACTTTGGATATCTAT
LOC_Os02g49620
Os.24692.1.A1_at--413--7951Chr02:30323326..30323350 (25 bp)
GGATATCTATCCTCAGAGACGCAGT
LOC_Os02g49620
Os.24692.1.A1_at--30--5031Chr02:30323346..30323370 (25 bp)
GCAGTGCTGCTACCCTGTTGAAGGC
LOC_Os02g49620
Os.24692.1.A1_at--211--10551Chr02:30323378..30323402 (25 bp)
TTCATTCCTTCTTGGCAGCAAATGT
LOC_Os02g49620
Os.24692.1.A1_at--478--191Chr02:30323455..30323479 (25 bp)
ATTTCAGCCCTGCATTTGCAGCGCA
LOC_Os02g49620
Os.24692.1.A1_at--1131--8991Chr02:30323505..30323529 (25 bp)
TGAATCCATGATGCCATCTGGTGCC
LOC_Os02g49620
Os.24692.1.A1_at--409--491Chr02:30323520..30323544 (25 bp)
ATCTGGTGCCTTTCATGGATGTTCT
LOC_Os02g49620
Target Sequence 
GAAACTGGAACAGCTGTTGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGTTGA
TATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCTGCAGAGCAAGTTTGAGCAGGACA
AGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATTCAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGA
GACGCAGTGCTGCTACCCTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGNTCNGTTGGATAACATT
TTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCAGATGTATTGGTTTAAAATCATGC
CATGAATCCATGATGCCATCTGGTGCCTTTCATGGATGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24692.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis