Browse Element(s) Details


Os.47935.1.S1_at

Description gb:AK072350.1
DB_XREF= gi:32982373
TID=Os.47935.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47935 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054H01, full insert sequence.
FL= gb:AK072350.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4967010/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49620Os.24692.1.A1_at11/112+30319915..30323596expressed protein
LOC_Os02g49630OsAffx.3014.1.S1_at11/112+30324133..30326791Tetraspanin family protein, expressed
LOC_Os02g49640Os.48262.1.A1_at1/112+30330462..30332974expressed protein
LOC_Os02g49650Os.19315.1.S1_s_at3/112+30334375..30338575hypothetical protein
LOC_Os02g49660OsAffx.12567.1.S1_at11/112+30340594..30341924expressed protein
LOC_Os02g49660OsAffx.12567.1.S1_x_at11/112+30340594..30341924expressed protein
LOC_Os02g49670OsAffx.3016.1.S1_x_at11/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49670Os.47935.1.S1_at10/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49680Os.7676.1.S1_at11/112+30356008..30357871calcium sensing receptor, putative, expressed
LOC_Os02g49690OsAffx.3017.1.S1_x_at11/112+30358538..30359950expressed protein
LOC_Os02g49690Os.5392.1.S1_at9/112+30358538..30359950expressed protein
LOC_Os02g49700Os.5933.1.S1_at9/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49700Os.57545.1.S1_x_at6/112+30375434..30377635Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47935.1.S1_at--1097--2351Chr02:30347289..30347313 (25 bp)
AAAGCCGCCAATGCCAACTATGCAA
LOC_Os02g49670
Os.47935.1.S1_at--825--651Chr02:30347270..30347294 (25 bp)
ATGCAACGCTGCACGAGGGTGTTAT
LOC_Os02g49670
Os.47935.1.S1_at--912--51Chr02:30347247..30347271 (25 bp)
ATTGAAGCGGCTTGGCATGCTCCAT
LOC_Os02g49670
Os.47935.1.S1_at--255--4991Chr02:30347233..30347257 (25 bp)
GCATGCTCCATGACGACAAGACGCT
LOC_Os02g49670
Os.47935.1.S1_at--144--731NONE
ATGTTCAATGAACCTCTACCGCAAC
NONE
Os.47935.1.S1_at--464--2951Chr02:30347059..30347083 (25 bp)
AAGGCGTCGCTGACCTTGTCGAGGA
LOC_Os02g49670
Os.47935.1.S1_at--1147--4171Chr02:30346973..30346997 (25 bp)
CCCATGATTTCTACCCCAGATGAAA
LOC_Os02g49670
Os.47935.1.S1_at--1133--2331Chr02:30346926..30346950 (25 bp)
AAAGACTCATAGTTTGCACCCTGCG
LOC_Os02g49670
Os.47935.1.S1_at--626--8071Chr02:30346892..30346916 (25 bp)
GGAGCTTTTGCTAATCGTCGCATGT
LOC_Os02g49670
Os.47935.1.S1_at--754--9411Chr02:30346878..30346902 (25 bp)
TCGTCGCATGTATCCTGCGTGGGAA
LOC_Os02g49670
Os.47935.1.S1_at--161--8191Chr02:30346857..30346881 (25 bp)
GGAAGCTGCCCTACATTTGGATGAT
LOC_Os02g49670
Target Sequence 
AAAGCCGCCAATGCCAACTATGCAACGCTGCACGAGGGTGTTATTGAAGCGGCTTGGCATGCTCCATGACGACAAGACGC
TCGACGAGGTGCTCTCCGACTACATCGCCATGTTCAATGAACCTCTACCGCAACACGTGNTCGCAGCGCTCACGTCCATC
TTCGACATCGACGCCGATGCAATCATGGAAGCCAATCACGTTGACAACACGCTCCNAGAGGTTGTCGGCGAAGGCGTCGC
TGACCTTGTCGAGGAGGTTGCCGACACAGCGGCATGAACGGGAGGGTGGGCGCCCTGCTGAGTACTCTGTCTTCTCCCCA
TGATTTCTACCCCAGATGAAAGTTTGTACCCTTTTGCTTGTGCAAAGACTCATAGTTTGCACCCTGCGGCTGCTGATGGA
GCTTTTGCTAATCGTCGCATGTATCCTGCGTGGGAAGCTGCCCTACATTTGGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis