Browse Element(s) Details


Os.57545.1.S1_x_at

Description gb:AF264731.1
DB_XREF= gi:10504981
TID=Os.57545.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57545 (NCBI UniGene Cluster)
UG_TITLE=Microsatellite 25CAC sequence
DEF=Oryza sativa microsatellite 25CAC sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g497006/11Homeobox domain containing protein, expressed
LOC_Os08g239301/11ENT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49670OsAffx.3016.1.S1_x_at11/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49670Os.47935.1.S1_at10/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49680Os.7676.1.S1_at11/112+30356008..30357871calcium sensing receptor, putative, expressed
LOC_Os02g49690OsAffx.3017.1.S1_x_at11/112+30358538..30359950expressed protein
LOC_Os02g49690Os.5392.1.S1_at9/112+30358538..30359950expressed protein
LOC_Os02g49700Os.5933.1.S1_at9/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49700Os.57545.1.S1_x_at6/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49710NANA2+30384862..30387384Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g49720Os.313.1.S1_a_at11/112+30386678..30390860Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g49720Os.313.2.S2_at11/112+30386678..30390860Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g49730OsAffx.3018.1.S1_at11/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49730OsAffx.22103.1.S1_at1/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49740OsAffx.24798.1.S1_at11/112+30399212..30399688hypothetical protein
LOC_Os02g49750NANA2+30401399..30401818hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009653biological_processmorphogenesis
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009825biological_processmultidimensional cell growth
GO:0009910biological_processnegative regulation of flower development
GO:0009965biological_processleaf morphogenesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57545.1.S1_x_at--406--9131NONE
TGCGGGCGCCGAATTGAAGTTCCCC
NONE
Os.57545.1.S1_x_at--82--472Chr08:14343172..14343464 (25 bp)
ATCTCGCCGCCGTGGACAGCAGCGG
LOC_Os08g23930
Os.57545.1.S1_x_at--183--7631NONE
GGGACGAGTACCACGACTGCGTGAT
NONE
Os.57545.1.S1_x_at--964--1851Chr02:30377123..30377147 (25 bp)
ACGACTGCGTGATGGGCCCCATGGA
LOC_Os02g49700
Os.57545.1.S1_x_at--364--6131NONE
GAGGGCTGCAGATAATACGCCGAAG
NONE
Os.57545.1.S1_x_at--898--9711NONE
TAATACGCCGAAGACGCCGGCGTCT
NONE
Os.57545.1.S1_x_at--261--4451NONE
GCCGGCGTCTTTTTCGCGGACCACG
NONE
Os.57545.1.S1_x_at--906--9651Chr02:30377306..30377330 (25 bp)
TCAGCTGCTGGTGGATGTGGAACTA
LOC_Os02g49700
Os.57545.1.S1_x_at--122--8671Chr02:30377321..30377345 (25 bp)
TGTGGAACTAGATTTCTCGCGCGCG
LOC_Os02g49700
Os.57545.1.S1_x_at--141--4572Chr05:27982331..27982707 (25 bp)
GCGCGCGCGTCGTCGTGCATTCAAT
NONE
Os.57545.1.S1_x_at--822--7191Chr02:30377352..30377376 (25 bp)
GTCGTGCATTCAATTCTCGTGTTAA
LOC_Os02g49700
Target Sequence 
TGCGGGCGCCGAATTGAAGTTCCCCGTCCCGGAACGCCGGAGGACACCGGGCGTTGGAGGAGGCGGCGGCGGCTTTCGAG
GAGCAGCAGGAGCAGCAGGTGAAGGCCGAGGACAGGCTGAGCACGGGGCAGCGGCGGGAGCGCGGTGGTGGACACGGACG
CGCAACTGGTGGTCGGGTGCGGCCGGCAGCATCTCGCCGCCGTGGACAGCAGCGGGGAGTCGTACTTCCCGGGCGGGGAC
GAGTACCACGACTGCGTGATGGGCCCCATGGACCACGCCGCGGGGGGCATCCAGTCGGAGGAGGACGACGGCGCCGGCAG
CGACGAGGGCTGCAGATAATACGCCGAAGACGCCGGCGTCTTTTTCGCGGACCACGGCCACCACCACCACCACCAACACG
CGGACGACGACGAGGAGGACGGGCCAGCAGATCAGCTGCTGGTGGATGTGGAACTAGATTTCTCGCGCGCGCGCGTCGTC
GTGCATTCAATTCTCGTGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57545.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis