Browse Element(s) Details


Os.313.2.S2_at

Description gb:AK119320.1
DB_XREF= gi:37988943
TID=Os.313.2
CNT=39
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for mitochondrial aldehyde dehydrogenase ALDH2a, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-H10, full insert sequence.
FL= gb:AK119320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4972011/11Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49700Os.5933.1.S1_at9/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49700Os.57545.1.S1_x_at6/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49710NANA2+30384862..30387384Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g49720Os.313.1.S1_a_at11/112+30386678..30390860Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g49720Os.313.2.S2_at11/112+30386678..30390860Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g49730OsAffx.3018.1.S1_at11/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49730OsAffx.22103.1.S1_at1/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49740OsAffx.24798.1.S1_at11/112+30399212..30399688hypothetical protein
LOC_Os02g49750NANA2+30401399..30401818hypothetical protein
LOC_Os02g49760Os.26684.1.S1_at11/112+30412629..30417270Potassium transporter 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009450biological_processgamma-aminobutyric acid catabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
GO:0004777molecular_functionsuccinate-semialdehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.313.2.S2_at--217--10751Chr02:30387131..30387155 (25 bp)
TTGACAACGTGGCACGGCAGCTCGC
LOC_Os02g49720
Os.313.2.S2_at--611--1651Chr02:30387008..30387032 (25 bp)
AGCGCCCATAGGAGCACGAGGACAT
LOC_Os02g49720
Os.313.2.S2_at--1100--6051Chr02:30386939..30386963 (25 bp)
GAGTTGTCTCCTTTCATGCGATCAA
LOC_Os02g49720
Os.313.2.S2_at--998--1611Chr02:30386906..30386930 (25 bp)
AGCGGATGGACTTCACACACATTTG
LOC_Os02g49720
Os.313.2.S2_at--166--2191Chr02:30386890..30386914 (25 bp)
ACACATTTGAGACCTCGAGGCTCGA
LOC_Os02g49720
Os.313.2.S2_at--896--691Chr02:30386804..30386828 (25 bp)
ATGAGACTTAGACTTCTGATCGAGT
LOC_Os02g49720
Os.313.2.S2_at--529--3651Chr02:30386792..30386816 (25 bp)
CTTCTGATCGAGTTCTGACTTTTGA
LOC_Os02g49720
Os.313.2.S2_at--130--8931Chr02:30386777..30386801 (25 bp)
TGACTTTTGAGGTTCAGCCGTTCAG
LOC_Os02g49720
Os.313.2.S2_at--57--10531Chr02:30386765..30386789 (25 bp)
TTCAGCCGTTCAGGTGTGATATCAC
LOC_Os02g49720
Os.313.2.S2_at--297--1551Chr02:30386739..30386763 (25 bp)
AGCTTAGCTACCGAAGTACTACTGG
LOC_Os02g49720
Os.313.2.S2_at--1048--4851Chr02:30386703..30386727 (25 bp)
GCTAGTGGCATCTGAAAACTGAACC
LOC_Os02g49720
Target Sequence 
TTGACAACGTGGCACGGCAGCTCGCCGACCTGTTCCGCCGAGAGGCCGCCGCGCGCCACGTCGTGCTGCCCGACGACGCG
GGCGCGGGCGAGGGCGAGGCGCGAGCGGCCGTATCCCCACCACAGCGCCCATAGGAGCACGAGGACATGGACGACGACCA
CCAGCGAGAGGCCGGCGACGAGGAAGACGTNGGAGTTGTCTCCTTTCATGCGATCAACCGAATCAAGCGGATGGACTTCA
CACACATTTGAGACCTCGAGGCTCGAGCAATGGAAGAGCAGTAGCAGTTAGGAATTAGGACAGAGAAAACACCTAAATAT
ATACTATATGAGACTTAGACTTCTGATCGAGTTCTGACTTTTGAGGTTCAGCCGTTCAGGTGTGATATCACAAGCTTAGC
TACCGAAGTACTACTGGTTTAAAATAATGCTAGTGGCATCTGAAAACTGAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.313.2.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis