Browse Element(s) Details


Os.313.1.S1_a_at

Description gb:AB030939.1
DB_XREF= gi:8574428
GEN=Aldh2a
TID=Os.313.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.313 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for mitochondrial aldehyde dehydrogenase ALDH2a, complete cds.
PROD=mitochondrial aldehyde dehydrogenase ALDH2a
FL= gb:AB030939.1 gb:AK121610.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4972011/11Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49700Os.5933.1.S1_at9/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49700Os.57545.1.S1_x_at6/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49710NANA2+30384862..30387384Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g49720Os.313.1.S1_a_at11/112+30386678..30390860Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g49720Os.313.2.S2_at11/112+30386678..30390860Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g49730OsAffx.3018.1.S1_at11/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49730OsAffx.22103.1.S1_at1/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49740OsAffx.24798.1.S1_at11/112+30399212..30399688hypothetical protein
LOC_Os02g49750NANA2+30401399..30401818hypothetical protein
LOC_Os02g49760Os.26684.1.S1_at11/112+30412629..30417270Potassium transporter 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009450biological_processgamma-aminobutyric acid catabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
GO:0004777molecular_functionsuccinate-semialdehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.313.1.S1_a_at--985--7671Chr02:30388161..30388185 (25 bp)
GGGTTCTACATCCAGCCAACCGTCT
LOC_Os02g49720
Os.313.1.S1_a_at--598--8671Chr02:30387772..30387796 (25 bp)
TGTGGGTGAACACCTACGACGTGTT
LOC_Os02g49720
Os.313.1.S1_a_at--34--5971Chr02:30387698..30387722 (25 bp)
GAGAAGGGCGTCTACAGCCTCCGCA
LOC_Os02g49720
Os.313.1.S1_a_at--987--4151Chr02:30387633..30387657 (25 bp)
CGCCGCCTGGTTGTAGCTGTAGTAA
LOC_Os02g49720
Os.313.1.S1_a_at--961--4731Chr02:30387618..30387642 (25 bp)
GCTGTAGTAATCGATCCTTTCTCTC
LOC_Os02g49720
Os.313.1.S1_a_at--686--531Chr02:30387583..30387607 (25 bp)
ATCGCCATTGCTGCGTGCTATGACT
LOC_Os02g49720
Os.313.1.S1_a_at--53--9151Chr02:30387572..30387596 (25 bp)
TGCGTGCTATGACTGCTATCCCGTG
LOC_Os02g49720
Os.313.1.S1_a_at--49--10151Chr02:30387556..30387580 (25 bp)
TATCCCGTGCTCTTCCATATCAGTT
LOC_Os02g49720
Os.313.1.S1_a_at--1162--10671Chr02:30387544..30387568 (25 bp)
TTCCATATCAGTTGTCACTTGTCAG
LOC_Os02g49720
Os.313.1.S1_a_at--474--2071Chr02:30387528..30387552 (25 bp)
ACTTGTCAGCGTGATGTCTCTGAAC
LOC_Os02g49720
Os.313.1.S1_a_at--416--5511Chr02:30387507..30387531 (25 bp)
GAACAACGCCAGAGATTGCGATGAA
LOC_Os02g49720
Target Sequence 
GGGTTCTACATCCAGCCAACCGTCTTTGCAGACGTCGAGGACGAAATGAAGATCGCGCAGGAGGAGATATTCGGGCCGGT
GCAGTCCATCCTCAAGTTCAGCACGGTGGAGGAGGTGGTGCGGAGGGCGAACGCGACGCCATACGGGCTGGCGGCGGGGG
TGTTCACCCAGAGGCTGGACGCGGCGAACACCCTGGCGCGGGCATTGAGGGTCGGGACGGTGTGGGTGAACACCTACGAC
GTGTTCGACGCGGCCGTCCCGTTCGGCGGCTACAAGATGAGCGGCGTTGGCAGGGAGAAGGGCGTCTACAGCCTCCGCAA
CTACCTCCAGACCAAGGCCGTCGTCACGCCCATCAAGGACGCCGCCTGGTTGTAGCTGTAGTAATCGATCCTTTCTCTCC
TCCATCCCCATCGCCATTGCTGCGTGCTATGACTGCTATCCCGTGCTCTTCCATATCAGTTGTCACTTGTCAGCGTGATG
TCTCTGAACAACGCCAGAGATTGCGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.313.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis