Browse Element(s) Details


OsAffx.3018.1.S1_at

Description tigr:9630.m04871
TID=OsAffx.3018.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4973011/11Pre-mRNA splicing factor prp31, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49700Os.5933.1.S1_at9/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49700Os.57545.1.S1_x_at6/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49710NANA2+30384862..30387384Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g49720Os.313.1.S1_a_at11/112+30386678..30390860Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g49720Os.313.2.S2_at11/112+30386678..30390860Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g49730OsAffx.3018.1.S1_at11/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49730OsAffx.22103.1.S1_at1/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49740OsAffx.24798.1.S1_at11/112+30399212..30399688hypothetical protein
LOC_Os02g49750NANA2+30401399..30401818hypothetical protein
LOC_Os02g49760Os.26684.1.S1_at11/112+30412629..30417270Potassium transporter 8, putative, expressed
LOC_Os02g49770Os.50746.1.S1_at11/112+30421851..30425872NHL repeat-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3018.1.S1_at--722--5211Chr02:30394157..30394181 (25 bp)
GAATTACCACCTGCGAAGATCCTAA
LOC_Os02g49730
OsAffx.3018.1.S1_at--816--5331Chr02:30394143..30394167 (25 bp)
GAAGATCCTAAAGCCACTTCCTGTT
LOC_Os02g49730
OsAffx.3018.1.S1_at--730--9271Chr02:30394125..30394149 (25 bp)
TCCTGTTCCAGATTGTATGCCCAAA
LOC_Os02g49730
OsAffx.3018.1.S1_at--1133--8631Chr02:30393725..30393749 (25 bp)
TGGGAAACTACGTCTCTTAGCTGGC
LOC_Os02g49730
OsAffx.3018.1.S1_at--730--10451Chr02:30393709..30393733 (25 bp)
TTAGCTGGCCAAAGCAGACTTGCTG
LOC_Os02g49730
OsAffx.3018.1.S1_at--840--4631Chr02:30393693..30393712 (20 bp)
GCTGCTAAGGTTGCCAAACGATTCA
LOC_Os02g49730
OsAffx.3018.1.S1_at--16--7691Chr02:30393160..30393184 (25 bp)
GGGTTAACATCAACTCTGGCATTTA
LOC_Os02g49730
OsAffx.3018.1.S1_at--559--8491Chr02:30393148..30393168 (21 bp)
TGGCATTTACACCAGTCCAAGGAAT
LOC_Os02g49730
OsAffx.3018.1.S1_at--424--8071Chr02:30392805..30392829 (25 bp)
GGAGCTTTCAAATCCACTGGTGCAC
LOC_Os02g49730
OsAffx.3018.1.S1_at--941--1951Chr02:30392790..30392814 (25 bp)
ACTGGTGCACAATGACCATTCTGTC
LOC_Os02g49730
OsAffx.3018.1.S1_at--451--2351Chr02:30392755..30392779 (25 bp)
AAAGCACTTATTTTTCGGATGTTGG
LOC_Os02g49730
Target Sequence 
GAATTACCACCTGCGAAGATCCTAAAGCCACTTCCTGTTCCAGATTGTATGCCCAAAAAGAAGAGAGGAGGTTGTCGGCT
CCGGAAAATGAAAGAAAGATATGCACAGACTGACATGATGAAGCTGGCAAATCGGATGCAGTTTGGTGTGCCGGAGGAGA
GCTCATTAGGTGATGGCTTAGGGAAAGGTTATGGCTTGCTTGGACAAGCAGGAAGTGGGAAACTACGTCTCTTAGCTGGC
CAAAGCAGACTTGCTGCTAAGGTTGCCAAACGATTCAAGGCAAGGAGTTGTGACAGGAGTGAGTCAAGGTCGGGGTTAAC
ATCAACTCTGGCATTTACACCAGTCCAAGGAATGGAGCTTTCAAATCCACTGGTGCACAATGACCATTCTGTCAGTGGAA
CCCAAAGCACTTATTTTTCGGATGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis