Browse Element(s) Details


Os.50746.1.S1_at

Description gb:AK101253.1
DB_XREF= gi:32986462
TID=Os.50746.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032F08, full insert sequence.
FL= gb:AK058253.1 gb:AK101253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4977011/11NHL repeat-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49730OsAffx.3018.1.S1_at11/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49730OsAffx.22103.1.S1_at1/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49740OsAffx.24798.1.S1_at11/112+30399212..30399688hypothetical protein
LOC_Os02g49750NANA2+30401399..30401818hypothetical protein
LOC_Os02g49760Os.26684.1.S1_at11/112+30412629..30417270Potassium transporter 8, putative, expressed
LOC_Os02g49770Os.50746.1.S1_at11/112+30421851..30425872NHL repeat-containing protein, putative, expressed
LOC_Os02g49780Os.9055.1.S1_at11/112+30426278..30428217expressed protein
LOC_Os02g49780OsAffx.30922.1.S1_x_at1/112+30426278..30428217expressed protein
LOC_Os02g49780OsAffx.30922.1.S1_at1/112+30426278..30428217expressed protein
LOC_Os02g49790OsAffx.3020.1.S1_at11/112+30429159..30431646expressed protein
LOC_Os02g49800Os.10843.1.S1_at11/112+30432084..30435591Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g49810OsAffx.3021.1.S1_at11/112+30436599..30436965hypothetical protein
LOC_Os02g49820Os.52416.1.S1_at11/112+30439080..30442151RNA recognition motif family protein, expressed
LOC_Os02g49830OsAffx.24799.1.S1_at11/112+30442173..30443713PPR986-12, putative, expressed
LOC_Os02g49840OsAffx.12568.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g49840Os.26399.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50746.1.S1_at--270--791Chr02:30425344..30425368 (25 bp)
ATGGTCGGTCTCAGTTCAATGGTTG
LOC_Os02g49770
Os.50746.1.S1_at--969--6491Chr02:30425365..30425389 (25 bp)
GTTGGAACGGAGACGCACCTCAGCA
LOC_Os02g49770
Os.50746.1.S1_at--491--10091Chr02:30425447..30425471 (25 bp)
TAGGCAGTATTCATCAGGACCGCAA
LOC_Os02g49770
Os.50746.1.S1_at--1121--8091Chr02:30425463..30425487 (25 bp)
GGACCGCAAACTTTCTATGAGCCAA
LOC_Os02g49770
Os.50746.1.S1_at--554--1251Chr02:30425506..30425530 (25 bp)
AGATTGTCTTTGGAGCCGTGCAGGA
LOC_Os02g49770
Os.50746.1.S1_at--748--8471Chr02:30425576..30425600 (25 bp)
TGGCGATCCGCAGTATGACCAAGAT
LOC_Os02g49770
Os.50746.1.S1_at--926--5851Chr02:30425592..30425616 (25 bp)
GACCAAGATGGGTTGCGGCACCGCA
LOC_Os02g49770
Os.50746.1.S1_at--824--1311Chr02:30425647..30425671 (25 bp)
AGATGGCCAGATGTCCTTTTTTGCA
LOC_Os02g49770
Os.50746.1.S1_at--583--10491Chr02:30425697..30425721 (25 bp)
TTAAGTTATTTTGCCGTCGTCGAAT
LOC_Os02g49770
Os.50746.1.S1_at--375--9411Chr02:30425713..30425737 (25 bp)
TCGTCGAATTTGTACTGCCTGAAAC
LOC_Os02g49770
Os.50746.1.S1_at--275--671Chr02:30425801..30425825 (25 bp)
ATGAACGTCGTGATCTTAGACCTCT
LOC_Os02g49770
Target Sequence 
ATGGTCGGTCTCAGTTCAATGGTTGGAACGGAGACGCACCTCAGCAGCAGCAGCANCAGCAGCAGCAGCAGCAAATACAT
CACCAGCAGTACTTACAGCATCATAGGCAGTATTCATCAGGACCGCAAACTTTCTATGAGCCAAGCTGTGAGGCAACAAA
CGAGATTGTCTTTGGAGCCGTGCAGGAGGTAGACNGCAAGCGCCGCGCTGTGGAGATCAAACCCATGAACCATGGCGATC
CGCAGTATGACCAAGATGGGTTGCGGCACCGCAGCAGCTACACCGGTTACAGCAACAACTGGTAGATGGCCAGATGTCCT
TTTTTGCAGCTACATGATTAGATTTACTGCTCGTTAAGTTATTTTGCCGTCGTCGAATTTGTACTGCCTGAAACAGATAA
ATAGAAATTCAGGNAGTACCGGTGATATGGGCAAAGTCGAAAGCTGGTTTTTGCTGGATGAACGTCGTGATCTTAGACCT
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis