Browse Element(s) Details


OsAffx.3021.1.S1_at

Description tigr:9630.m04879
TID=OsAffx.3021.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4981011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49760Os.26684.1.S1_at11/112+30412629..30417270Potassium transporter 8, putative, expressed
LOC_Os02g49770Os.50746.1.S1_at11/112+30421851..30425872NHL repeat-containing protein, putative, expressed
LOC_Os02g49780Os.9055.1.S1_at11/112+30426278..30428217expressed protein
LOC_Os02g49780OsAffx.30922.1.S1_x_at1/112+30426278..30428217expressed protein
LOC_Os02g49780OsAffx.30922.1.S1_at1/112+30426278..30428217expressed protein
LOC_Os02g49790OsAffx.3020.1.S1_at11/112+30429159..30431646expressed protein
LOC_Os02g49800Os.10843.1.S1_at11/112+30432084..30435591Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g49810OsAffx.3021.1.S1_at11/112+30436599..30436965hypothetical protein
LOC_Os02g49820Os.52416.1.S1_at11/112+30439080..30442151RNA recognition motif family protein, expressed
LOC_Os02g49830OsAffx.24799.1.S1_at11/112+30442173..30443713PPR986-12, putative, expressed
LOC_Os02g49840OsAffx.12568.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g49840Os.26399.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g49850OsAffx.12569.1.S1_at11/112+30461715..30462567Chemocyanin precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3021.1.S1_at--518--391Chr02:30436639..30436663 (25 bp)
ATCACCGCCGTGGACAACCAGAAGT
LOC_Os02g49810
OsAffx.3021.1.S1_at--528--9211Chr02:30436670..30436694 (25 bp)
TCCACCTCCTCGAACTAGGACTAAA
LOC_Os02g49810
OsAffx.3021.1.S1_at--560--10051Chr02:30436685..30436709 (25 bp)
TAGGACTAAAGTTCGTGGGACACGT
LOC_Os02g49810
OsAffx.3021.1.S1_at--82--8651Chr02:30436700..30436724 (25 bp)
TGGGACACGTGGACCAGCACCAGTG
LOC_Os02g49810
OsAffx.3021.1.S1_at--224--1731Chr02:30436718..30436742 (25 bp)
ACCAGTGTCATGGTGGCACGCGCGA
LOC_Os02g49810
OsAffx.3021.1.S1_at--152--6191Chr02:30436741..30436765 (25 bp)
GAGGCTTTCCATGGCACCTTGAAGG
LOC_Os02g49810
OsAffx.3021.1.S1_at--1103--3491Chr02:30436750..30436774 (25 bp)
CATGGCACCTTGAAGGACCGGTCGG
LOC_Os02g49810
OsAffx.3021.1.S1_at--541--7571Chr02:30436846..30436870 (25 bp)
GGGCATGAACCAAGGGCTGACCCCG
LOC_Os02g49810
OsAffx.3021.1.S1_at--913--8331Chr02:30436860..30436884 (25 bp)
GGCTGACCCCGCAAAAGGCGTTGTT
LOC_Os02g49810
OsAffx.3021.1.S1_at--65--2311Chr02:30436873..30436897 (25 bp)
AAAGGCGTTGTTGAGCACCTCGTCA
LOC_Os02g49810
OsAffx.3021.1.S1_at--1046--3611Chr02:30436911..30436935 (25 bp)
CTTGTCTCGGAGGTGCAGTAGCAGC
LOC_Os02g49810
Target Sequence 
ATCACCGCCGTGGACAACCAGAAGTGAGAGCTCCACCTCCTCGAACTAGGACTAAAGTTCGTGGGACACGTGGACCAGCA
CCAGTGTCATGGTGGCACGCGCGAGGCTTTCCATGGCACCTTGAAGGACCGGTCGGGGATGTCCCTATGGTGAAGGAGGT
GCTTGAATGGCTAGAGGGGCATGAACCAAGGGCTGACCCCGCAAAAGGCGTTGTTGAGCACCTCGTCATCGCGCCACTGC
CCTTGTCTCGGAGGTGCAGTAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis