Browse Element(s) Details


Os.10843.1.S1_at

Description gb:AK072199.1
DB_XREF= gi:32982222
TID=Os.10843.1
CNT=42
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.10843 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013161I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013161I06, full insert sequence.
FL= gb:AK072199.1 gb:AK068664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4980011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49760Os.26684.1.S1_at11/112+30412629..30417270Potassium transporter 8, putative, expressed
LOC_Os02g49770Os.50746.1.S1_at11/112+30421851..30425872NHL repeat-containing protein, putative, expressed
LOC_Os02g49780Os.9055.1.S1_at11/112+30426278..30428217expressed protein
LOC_Os02g49780OsAffx.30922.1.S1_x_at1/112+30426278..30428217expressed protein
LOC_Os02g49780OsAffx.30922.1.S1_at1/112+30426278..30428217expressed protein
LOC_Os02g49790OsAffx.3020.1.S1_at11/112+30429159..30431646expressed protein
LOC_Os02g49800Os.10843.1.S1_at11/112+30432084..30435591Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g49810OsAffx.3021.1.S1_at11/112+30436599..30436965hypothetical protein
LOC_Os02g49820Os.52416.1.S1_at11/112+30439080..30442151RNA recognition motif family protein, expressed
LOC_Os02g49830OsAffx.24799.1.S1_at11/112+30442173..30443713PPR986-12, putative, expressed
LOC_Os02g49840OsAffx.12568.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g49840Os.26399.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10843.1.S1_at--798--7011Chr02:30433021..30433045 (25 bp)
GTACATTACCTTTATGCTTGGCAAC
LOC_Os02g49800
Os.10843.1.S1_at--264--8511Chr02:30433003..30433027 (25 bp)
TGGCAACTGATTTTCCTGTGAGGTA
LOC_Os02g49800
Os.10843.1.S1_at--1020--751Chr02:30432853..30432877 (25 bp)
ATGTCAAACAGCTCTTCAAGCCCTT
LOC_Os02g49800
Os.10843.1.S1_at--770--2651Chr02:30432836..30432860 (25 bp)
AAGCCCTTGAATCTTCATTTTGGGA
LOC_Os02g49800
Os.10843.1.S1_at--519--5491Chr02:30432790..30432814 (25 bp)
GAACATTCACCATTCTTCCTGATAA
LOC_Os02g49800
Os.10843.1.S1_at--545--2931Chr02:30432633..30432657 (25 bp)
AAGGCAATGTCTGCCTGGGATTCCT
LOC_Os02g49800
Os.10843.1.S1_at--442--6031Chr02:30432446..30432469 (24 bp)
GAGATAATGCTCTGCGCGGCAAGTT
LOC_Os02g49800
Os.10843.1.S1_at--515--9731Chr02:30432382..30432406 (25 bp)
TAATTCAGACTGCACCAAGCCACAA
LOC_Os02g49800
Os.10843.1.S1_at--1152--5971Chr02:30432290..30432314 (25 bp)
GAGACTACCAATAGAGCTGCTTACG
LOC_Os02g49800
Os.10843.1.S1_at--1148--291Chr02:30432264..30432288 (25 bp)
ATAGCATATCCTGTTATGTGCCGCC
LOC_Os02g49800
Os.10843.1.S1_at--752--2271Chr02:30432214..30432238 (25 bp)
AAATCCTGGTTGTTTGTTGTATACT
LOC_Os02g49800
Target Sequence 
GTACATTACCTTTATGCTTGGCAACTGATTTTCCTGTGAGGTATTTGGAAGATGTCAAACAGCTCTTCAAGCCCTTGAAT
CTTCATTTTGGGAAAAGATGGTTTGTAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTGATAA
AGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGATAATGCTCTGC
GCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGATTGGATGGACTAATTCAGACTGCACCAAGCCACAAACACAA
AAGGGCTTTCCCTTCTTCCTCTAACAAGTATTGTGCAATAAACATATGTAAATGATACATAGAGACTACCAATAGAGCTG
CTTACGAATAGCATATCCTGTTATGTGCCGCCCTATCTCCTCTACAGTCCATAGTATAAATCCTGGTTGTTTGTTGTATA
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis