Browse Element(s) Details


OsAffx.22103.1.S1_at

Description gb:NM_188478.1
DB_XREF= gi:34904039
GEN=P0665D10.19
TID=OsAffx.22103.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0665D10.19 (P0665D10.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g497301/11Pre-mRNA splicing factor prp31, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49700Os.5933.1.S1_at9/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49700Os.57545.1.S1_x_at6/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49710NANA2+30384862..30387384Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g49720Os.313.1.S1_a_at11/112+30386678..30390860Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g49720Os.313.2.S2_at11/112+30386678..30390860Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g49730OsAffx.3018.1.S1_at11/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49730OsAffx.22103.1.S1_at1/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49740OsAffx.24798.1.S1_at11/112+30399212..30399688hypothetical protein
LOC_Os02g49750NANA2+30401399..30401818hypothetical protein
LOC_Os02g49760Os.26684.1.S1_at11/112+30412629..30417270Potassium transporter 8, putative, expressed
LOC_Os02g49770Os.50746.1.S1_at11/112+30421851..30425872NHL repeat-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22103.1.S1_at--96--4091Chr01:6488247..6488271 (25 bp)
CGACGCCATGGCACGGATTTGTAAC
NONE
OsAffx.22103.1.S1_at--882--5091Chr01:6488237..6488261 (25 bp)
GCACGGATTTGTAACGCCCTCGGGT
NONE
OsAffx.22103.1.S1_at--1088--4032Chr09:13090100..13090121 (22 bp)
CGATCGGCACTTCATCCGGCAAGGG
NONE
OsAffx.22103.1.S1_at--306--6394Chr04:11582033..11582052 (20 bp)
GATCGGAGCCGTCCATTAGATCGGA
NONE
OsAffx.22103.1.S1_at--660--10011Chr01:6488007..6488031 (25 bp)
TAGATCGGACGGCTCAGTTTTGCCT
NONE
OsAffx.22103.1.S1_at--119--9651Chr01:6487994..6488018 (25 bp)
TCAGTTTTGCCTAGCGTTGGGCCAC
NONE
OsAffx.22103.1.S1_at--1024--5031Chr01:6487959..6487983 (25 bp)
GCAGATTACGCTACGCCCAATGGGC
NONE
OsAffx.22103.1.S1_at--943--8395Chr03:10109937..10109957 (21 bp)
GGCCGCGGAAGTGCATCGGACCTTC
NONE
OsAffx.22103.1.S1_at--358--4011Chr01:6487872..6487896 (25 bp)
CGTCGAATTGATTCGGCTCGCCGAA
NONE
OsAffx.22103.1.S1_at--328--77510Chr12:5870359..5870383 (25 bp)
GGTGTCACACTATCAAACGGTGTTT
NONE
OsAffx.22103.1.S1_at--87--51115Chr12:5870397..5870416 (20 bp)
GCACGGGCACTATTGCTAGTCATTT
NONE
Target Sequence 
CGACGCCATGGCACGGATTTGTAACGCCCTCGGGTGCGCCCCCCAGCCGGCAAAGCAGGAGCCGCTCGGCGGTCGTCACC
GCACGCGCGCACCAGCTCGCCGTTGCCACCTTTGCCGTCGTTCCGCTCGCTCGTCGCCGGAGAGAAATGGGATCGGGAGA
GAGGGATTTGGGAGCTAGGGTTTTGCCCTTTTCTCCCGATCGGCACTTCATCCGGCAAGGGGACGATCGGAGCCGTCCAT
TAGATCGGACGGCTCAGTTTTGCCTAGCGTTGGGCCACCGCCGCCGCCGCAGATTACGCTACGCCCAATGGGCCGCGGAA
GTGCATCGGACCTTCCCCCGCATATGTGCCATGCTGCTCAGCTCGCGGGCCGTCGAATTGATTCGGCTCGCCGAAGATGG
GCCAGCCCAAGTTTGGGCCGGCTTGGGAAGACCTGGGCCAAAAGTTTTCAAGGTGTCACACTATCAAACGGTGTTTTTCC
CGTTGCAACGCACGGGCACTATTGCTAGTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis