Browse Element(s) Details


Os.7676.1.S1_at

Description gb:AY476807.1
DB_XREF= gi:41352314
GEN=CaS
TID=Os.7676.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7676 (NCBI UniGene Cluster)
DEF=Oryza sativa extracellular calcium sensing receptor (CaS) mRNA, complete cds.
PROD=extracellular calcium sensing receptor
FL= gb:AK058726.1 gb:AY476807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4968011/11calcium sensing receptor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49640Os.48262.1.A1_at1/112+30330462..30332974expressed protein
LOC_Os02g49650Os.19315.1.S1_s_at3/112+30334375..30338575hypothetical protein
LOC_Os02g49660OsAffx.12567.1.S1_at11/112+30340594..30341924expressed protein
LOC_Os02g49660OsAffx.12567.1.S1_x_at11/112+30340594..30341924expressed protein
LOC_Os02g49670OsAffx.3016.1.S1_x_at11/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49670Os.47935.1.S1_at10/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49680Os.7676.1.S1_at11/112+30356008..30357871calcium sensing receptor, putative, expressed
LOC_Os02g49690OsAffx.3017.1.S1_x_at11/112+30358538..30359950expressed protein
LOC_Os02g49690Os.5392.1.S1_at9/112+30358538..30359950expressed protein
LOC_Os02g49700Os.5933.1.S1_at9/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49700Os.57545.1.S1_x_at6/112+30375434..30377635Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7676.1.S1_at--996--2311Chr02:30356897..30356920 (24 bp)
AAAGGTGACCTGACCGCTGCACAAG
LOC_Os02g49680
Os.7676.1.S1_at--568--2691Chr02:30356875..30356899 (25 bp)
AAGCTCTGGACATGGTGACCTCGCA
LOC_Os02g49680
Os.7676.1.S1_at--778--7371Chr02:30356861..30356885 (25 bp)
GTGACCTCGCAAGATTACGTGCTGA
LOC_Os02g49680
Os.7676.1.S1_at--201--10471Chr02:30356847..30356871 (25 bp)
TTACGTGCTGATCGATGTGAGGACC
LOC_Os02g49680
Os.7676.1.S1_at--658--5371Chr02:30356775..30356799 (25 bp)
GAAGAACAAGCTCATCTCTATCCCG
LOC_Os02g49680
Os.7676.1.S1_at--1154--4731Chr02:30356587..30356611 (25 bp)
GCTGAAGATCTCCTACCTCAAGAGG
LOC_Os02g49680
Os.7676.1.S1_at--678--8531Chr02:30356443..30356558 (25 bp)
TGGACTCGTATTGCGACAGCTCGAA
LOC_Os02g49680
Os.7676.1.S1_at--725--9711Chr02:30356386..30356410 (25 bp)
TCAAGAACTGCTGGGTCATGGCCGG
LOC_Os02g49680
Os.7676.1.S1_at--484--7631Chr02:30356321..30356345 (25 bp)
GGGACGGACTCGTACAACCTGTCGG
LOC_Os02g49680
Os.7676.1.S1_at--376--2191Chr02:30356308..30356332 (25 bp)
ACAACCTGTCGGTCGTCGAAGTCGT
LOC_Os02g49680
Os.7676.1.S1_at--89--1851Chr02:30356210..30356234 (25 bp)
ACGAGTCGTAAGCTTCTTCCCGGCA
LOC_Os02g49680
Target Sequence 
AAAGGTGACCTGACCGCTGCACAAGCTCTGGACATGGTGACCTCGCAAGATTACGTGCTGATCGATGTGAGGACCGAGAA
GGACAAGGCCAAAACCGGCGTGCCACAGCTCCCCTCGAACGCGAAGAACAAGCTCATCTCTATCCCGCTGGAAGAGCTTC
CAAGCAAGACGAAGAGCATGGTGCGCAACGCGAAACAAGCCGAGGCGGAGATCGCCGCGCTGAAGATCTCCTACCTCAAG
AGGATCGGCAAGGGCTCCAACGTCATCATCATGGACTCGTATTGCGACAGCTCGAAGATCGTGGCGAAGACGCTCAACAG
CGTCGGATTCAAGAACTGCTGGGTCATGGCCGGCGGCTTCTCCGGCAGGAAAGGGTGGGCGCAGAGCCGGCTCGGGACGG
ACTCGTACAACCTGTCGGTCGTCGAAGTCGTCACGCCGTCGCGGGTAATTCCTGCGGCCGCTGATCGGCTCGTGACGGCT
TCGTCGTCGGCTTCACGGACGACCACGAGTCGTAAGCTTCTTCCCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis