Browse Element(s) Details


OsAffx.12567.1.S1_x_at

Description tigr:9630.m04863
TID=OsAffx.12567.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4966011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49610Os.37523.1.S1_at11/112+30317371..30319797H/ACA ribonucleoprotein complex subunit 2, putative, expressed
LOC_Os02g49620Os.24692.1.A1_at11/112+30319915..30323596expressed protein
LOC_Os02g49630OsAffx.3014.1.S1_at11/112+30324133..30326791Tetraspanin family protein, expressed
LOC_Os02g49640Os.48262.1.A1_at1/112+30330462..30332974expressed protein
LOC_Os02g49650Os.19315.1.S1_s_at3/112+30334375..30338575hypothetical protein
LOC_Os02g49660OsAffx.12567.1.S1_at11/112+30340594..30341924expressed protein
LOC_Os02g49660OsAffx.12567.1.S1_x_at11/112+30340594..30341924expressed protein
LOC_Os02g49670OsAffx.3016.1.S1_x_at11/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49670Os.47935.1.S1_at10/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49680Os.7676.1.S1_at11/112+30356008..30357871calcium sensing receptor, putative, expressed
LOC_Os02g49690OsAffx.3017.1.S1_x_at11/112+30358538..30359950expressed protein
LOC_Os02g49690Os.5392.1.S1_at9/112+30358538..30359950expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12567.1.S1_x_at--190--9951Chr02:30341133..30341157 (25 bp)
TACGACTACGTCGTGCTCAACGGCG
LOC_Os02g49660
OsAffx.12567.1.S1_x_at--505--9411Chr02:30341063..30341087 (25 bp)
TCGTCGGGTGCAACAACGACTGTCA
LOC_Os02g49660
OsAffx.12567.1.S1_x_at--876--3271Chr02:30341053..30341077 (25 bp)
CAACAACGACTGTCACGGCGGCGAT
LOC_Os02g49660
OsAffx.12567.1.S1_x_at--838--7411Chr02:30340941..30340965 (25 bp)
GTGTTCCGCGGCACGGTGATCGTCC
LOC_Os02g49660
OsAffx.12567.1.S1_x_at--759--9931Chr02:30340896..30340920 (25 bp)
TACGAGAACGGCAAGTGGTACGACG
LOC_Os02g49660
OsAffx.12567.1.S1_x_at--906--8171Chr02:30340868..30340892 (25 bp)
GGAACTGCCTGAGGACGCGGCCCAT
LOC_Os02g49660
OsAffx.12567.1.S1_x_at--534--6151Chr02:30340747..30340771 (25 bp)
GAGGTTCTTGCTGATGGACGTCAGC
LOC_Os02g49660
OsAffx.12567.1.S1_x_at--624--8231Chr02:30340697..30340721 (25 bp)
GGCACCCTGGGCAGTACGGCCACTG
LOC_Os02g49660
OsAffx.12567.1.S1_x_at--263--1951Chr02:30340676..30340700 (25 bp)
ACTGGCCGCACGAGAAGGTCGGCTT
LOC_Os02g49660
OsAffx.12567.1.S1_x_at--1119--4111Chr02:30340670..30340694 (25 bp)
CGCACGAGAAGGTCGGCTTCGGCAT
LOC_Os02g49660
OsAffx.12567.1.S1_x_at--1041--4971Chr02:30340649..30340673 (25 bp)
GCATCGACTGCGTCCACTGGTGCTT
LOC_Os02g49660
Target Sequence 
TACGACTACGTCGTGCTCAACGGCGCCAAGTGGTTCACCCGCCCCACCATCCTCTACGAGGGAGGCCGCCTCGTCGGGTG
CAACAACGACTGTCACGGCGGCGATCCCAACGCCACCGCCGCCACGGCGCCGCCGGAGTACGCGGTGCGCGCGTCGTTCC
GGACCGCGCTCCGCGCGCTGCGCGAGCACCCCGTGTTCCGCGGCACGGTGATCGTCCGCACGGTGGCGCCGCCGCACTAC
GAGAACGGCAAGTGGTACGACGGCGGGAACTGCCTGAGGACGCGGCCCATGCGGAGCGACGAGACGGGCCTCCCGGAGAC
GGAGGCCGCGTTCCACGCCGCGCAGGTGGAGGAGTTCCGCGCCGCGGCGGCGGCGGCGGCGGGTGGGAGGTTCTTGCTGA
TGGACGTCAGCGGGATGATGCAGATGCGCGGCGACGGGCACCCTGGGCAGTACGGCCACTGGCCGCACGAGAAGGTCGGC
TTCGGCATCGACTGCGTCCACTGGTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12567.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis