Browse Element(s) Details


OsAffx.3014.1.S1_at

Description tigr:9630.m04860
TID=OsAffx.3014.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4963011/11Tetraspanin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49570Os.14793.1.S1_at11/112+30291340..30300270Peptidase family U7 containing protein, expressed
LOC_Os02g49580NANA2+30302974..30303525expressed protein
LOC_Os02g49590OsAffx.3013.1.S1_at11/112+30304672..30307240ASC1-like protein 2, putative, expressed
LOC_Os02g49600Os.53695.1.S1_at11/112+30310272..30313936Leucine Rich Repeat family protein, expressed
LOC_Os02g49610Os.37523.1.S1_at11/112+30317371..30319797H/ACA ribonucleoprotein complex subunit 2, putative, expressed
LOC_Os02g49620Os.24692.1.A1_at11/112+30319915..30323596expressed protein
LOC_Os02g49630OsAffx.3014.1.S1_at11/112+30324133..30326791Tetraspanin family protein, expressed
LOC_Os02g49640Os.48262.1.A1_at1/112+30330462..30332974expressed protein
LOC_Os02g49650Os.19315.1.S1_s_at3/112+30334375..30338575hypothetical protein
LOC_Os02g49660OsAffx.12567.1.S1_at11/112+30340594..30341924expressed protein
LOC_Os02g49660OsAffx.12567.1.S1_x_at11/112+30340594..30341924expressed protein
LOC_Os02g49670OsAffx.3016.1.S1_x_at11/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49670Os.47935.1.S1_at10/112+30346830..30350609Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3014.1.S1_at--81--2671Chr02:30325386..30325410 (25 bp)
AAGCCGCCAGTGTACTGCGGGTACG
LOC_Os02g49630
OsAffx.3014.1.S1_at--458--1851Chr02:30325420..30325444 (25 bp)
ACGAGACGTTCTGGATAGCGCCGGC
LOC_Os02g49630
OsAffx.3014.1.S1_at--1002--1891Chr02:30325465..30325489 (25 bp)
ACGTCGACTGCCTGGAGTGGAGCAA
LOC_Os02g49630
OsAffx.3014.1.S1_at--1024--1091Chr02:30325480..30325504 (25 bp)
AGTGGAGCAACGACCAGGCCGTGCT
LOC_Os02g49630
OsAffx.3014.1.S1_at--247--3871Chr02:30325539..30325563 (25 bp)
CTGGACACCGTCAGGCGAAACTGGA
LOC_Os02g49630
OsAffx.3014.1.S1_at--566--531Chr02:30325642..30325867 (25 bp)
ATCGCAGCCGAGTCAGGTTGGGCAA
LOC_Os02g49630
OsAffx.3014.1.S1_at--287--2751Chr02:30325870..30325894 (25 bp)
AAGAACCCATCTTAGCAGTGCCGGC
LOC_Os02g49630
OsAffx.3014.1.S1_at--1036--7271Chr02:30325887..30325911 (25 bp)
GTGCCGGCTATATCCATCAAGACAT
LOC_Os02g49630
OsAffx.3014.1.S1_at--153--7351Chr02:30326521..30326545 (25 bp)
GTGACCGTCGTGTCCTACTGAAAAG
LOC_Os02g49630
OsAffx.3014.1.S1_at--911--7931Chr02:30326551..30326575 (25 bp)
GGATTAGTTCTGAGGAGGCCAATAA
LOC_Os02g49630
OsAffx.3014.1.S1_at--878--2711Chr02:30326596..30326620 (25 bp)
AAGCAGTTGCGATTGAGAATTCACA
LOC_Os02g49630
Target Sequence 
AAGCCGCCAGTGTACTGCGGGTACGAGCGCGTGAACGAGACGTTCTGGATAGCGCCGGCGCGGGGCCTGGACGCGGCGGA
CGTCGACTGCCTGGAGTGGAGCAACGACCAGGCCGTGCTGTGCTTCCGCTGCAACGCCTGCAAGGCCAGTGCGCTGGACA
CCGTCAGGCGAAACTGGAGGGCCGTGGCCGTGCTCAACGTCGCCGTCCTCGCCATCCTCATGCTCGCCTACTCCCTCGCC
TGCTGCTCCGTGCGGGATCGCAGCCGAGTCAGGTTGGGCAAGAAAGAACCCATCTTAGCAGTGCCGGCTATATCCATCAA
GACATCAAAGCTAAAACTTTGGAACAACCAAGCGCCAACAACAACCCCATCGGTGTGTGACCGTCGTGTCCTACTGAAAA
GGCAATGGATTAGTTCTGAGGAGGCCAATAAGATGGTTGCCGTGGCAAAAGAAGCAGTTGCGATTGAGAATTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis