Browse Element(s) Details


Os.53695.1.S1_at

Description gb:AK073972.1
DB_XREF= gi:32983995
TID=Os.53695.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072J21, full insert sequence.
FL= gb:AK073972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4960011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49560OsAffx.12566.1.S1_at11/112+30289740..30290249bZIP transcription factor family protein, expressed
LOC_Os02g49570Os.14793.1.S1_at11/112+30291340..30300270Peptidase family U7 containing protein, expressed
LOC_Os02g49580NANA2+30302974..30303525expressed protein
LOC_Os02g49590OsAffx.3013.1.S1_at11/112+30304672..30307240ASC1-like protein 2, putative, expressed
LOC_Os02g49600Os.53695.1.S1_at11/112+30310272..30313936Leucine Rich Repeat family protein, expressed
LOC_Os02g49610Os.37523.1.S1_at11/112+30317371..30319797H/ACA ribonucleoprotein complex subunit 2, putative, expressed
LOC_Os02g49620Os.24692.1.A1_at11/112+30319915..30323596expressed protein
LOC_Os02g49630OsAffx.3014.1.S1_at11/112+30324133..30326791Tetraspanin family protein, expressed
LOC_Os02g49640Os.48262.1.A1_at1/112+30330462..30332974expressed protein
LOC_Os02g49650Os.19315.1.S1_s_at3/112+30334375..30338575hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53695.1.S1_at--1066--8631Chr02:30310799..30310823 (25 bp)
TGGGAAGCATCCCAGCGCGCTGACT
LOC_Os02g49600
Os.53695.1.S1_at--1022--4571Chr02:30310783..30310807 (25 bp)
GCGCTGACTCACACAAGTTCAAAGT
LOC_Os02g49600
Os.53695.1.S1_at--337--2311Chr02:30310763..30310787 (25 bp)
AAAGTGCCTGAGTTCACCTTCGGTC
LOC_Os02g49600
Os.53695.1.S1_at--332--9091Chr02:30310736..30310760 (25 bp)
TGCTACTCTGACCTGACGGATGACT
LOC_Os02g49600
Os.53695.1.S1_at--124--7991Chr02:30310719..30310743 (25 bp)
GGATGACTCGTCATTGCTGGTCCAG
LOC_Os02g49600
Os.53695.1.S1_at--751--71Chr02:30310707..30310731 (25 bp)
ATTGCTGGTCCAGGCAGTCGAGCTC
LOC_Os02g49600
Os.53695.1.S1_at--392--1151Chr02:30310692..30310716 (25 bp)
AGTCGAGCTCTCTGGGCCGAGATGA
LOC_Os02g49600
Os.53695.1.S1_at--506--1731Chr02:30310642..30310666 (25 bp)
ACCATCATTAGTTGTTTGCAGCAGG
LOC_Os02g49600
Os.53695.1.S1_at--357--6411Chr02:30310618..30310642 (25 bp)
GATCTGTACAGCAAGAGACACCACT
LOC_Os02g49600
Os.53695.1.S1_at--289--1531Chr02:30310520..30310544 (25 bp)
AGCAGGTATCAGATCAGCTGTACAA
LOC_Os02g49600
Os.53695.1.S1_at--646--9971Chr02:30310362..30310386 (25 bp)
TACCTTTTGCCTTAGCTAGTGTTAG
LOC_Os02g49600
Target Sequence 
TGGGAAGCATCCCAGCGCGCTGACTCACACAAGTTCAAAGTGCCTGAGTTCACCTTCGGTCGCTGCTACTCTGACCTGAC
GGATGACTCGTCATTGCTGGTCCAGGCAGTCGAGCTCTCTGGGCCGAGATGACACGATAACAAATAGTGGAAGGCAAACC
ATCATTAGTTGTTTGCAGCAGGATCTGTACAGCAAGAGACACCACTGTACAATGGAAAAATAGCCAAAAAAAAAAATTTA
AAGCAAGCAACTGCATGCCAATGCAAAATCACAAATCGAAGCAGGTATCAGATCAGCTGTACAAAGATTAAAAGAAGAGC
ACTTCCTAGGCATAGGATATTTCTACTTTTACAGATTCTGTAACTATTGGTAGAATAAGTTTGCAGAGCAATATTTTTCA
AGATGTAACATTTTGTTTATGCTTTTTTCCTCCCTTGTACCTTTTGCCTTAGCTAGTGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis