Browse Element(s) Details


Os.50290.1.S1_at

Description gb:AK120552.1
DB_XREF= gi:37990175
TID=Os.50290.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130C13, full insert sequence.
FL= gb:AK060172.1 gb:AK120552.1 gb:AK062565.1 gb:AK065834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4952011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49490OsAffx.22947.1.S1_x_at8/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.2.S1_x_at4/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.3.S1_x_at2/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.5.S1_x_at1/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49500NANA2+30248718..30250587hypothetical protein
LOC_Os02g49510Os.52768.1.S1_at9/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.18333.1.S1_at6/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.22086.1.S1_x_at2/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49520Os.50290.1.S1_at11/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.9217.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.21372.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49530Os.11268.1.S1_at11/112+30270583..30273419expressed protein
LOC_Os02g49540OsAffx.3011.1.S1_at11/112+30275432..30275795hypothetical protein
LOC_Os02g49550OsAffx.3012.1.S1_at11/112+30276615..30277550Zinc finger, C3HC4 type family protein
LOC_Os02g49560OsAffx.12566.1.S1_at11/112+30289740..30290249bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50290.1.S1_at--67--8691Chr02:30265507..30265531 (25 bp)
TGTGCACGCTCGTCGACGACAGGGT
LOC_Os02g49520
Os.50290.1.S1_at--811--8651Chr02:30265621..30265645 (25 bp)
TGTGGCACAGGTGTTTCTCCGTGGT
LOC_Os02g49520
Os.50290.1.S1_at--947--8611Chr02:30265720..30265744 (25 bp)
TGGTGAGCGCATTCCACCGCGGCGA
LOC_Os02g49520
Os.50290.1.S1_at--398--1371Chr02:30265768..30265792 (25 bp)
AGAGCATCCTCAGGAGGCTGCACAA
LOC_Os02g49520
Os.50290.1.S1_at--1086--2211Chr02:30265789..30265813 (25 bp)
ACAAGATGCCTGACTACTCTGCAAC
LOC_Os02g49520
Os.50290.1.S1_at--908--9471Chr02:30265806..30265830 (25 bp)
TCTGCAACCTACATGTCCGTGGAAT
LOC_Os02g49520
Os.50290.1.S1_at--853--7251Chr02:30265820..30265844 (25 bp)
GTCCGTGGAATTCTAGTGCTTTCAT
LOC_Os02g49520
Os.50290.1.S1_at--399--311Chr02:30265865..30265889 (25 bp)
ATACCACCGGTAAATAGCAGCAGAT
LOC_Os02g49520
Os.50290.1.S1_at--292--1531Chr02:30265883..30265907 (25 bp)
AGCAGATATTTGCTGCCGTGCATAT
LOC_Os02g49520
Os.50290.1.S1_at--161--9611Chr02:30265929..30265953 (25 bp)
TCATCTTGTACATCCGGTCGCAAAA
LOC_Os02g49520
Os.50290.1.S1_at--74--7231Chr02:30265945..30265969 (25 bp)
GTCGCAAAATTTATCTCAGTAGCAT
LOC_Os02g49520
Target Sequence 
TGTGCACGCTCGTCGACGACAGGGTGGACGTCGAGAAGGCCGTGGTCGCCCTCGCCGGACAGGGCGCGGCGAGGCGCGTG
CTCGCGGCGCTGAGGCAGCACAGGGGGAACAGCCTGTGGCACAGGTGTTTCTCCGTGGTGGAGAAGCTGCTGGTGCACGG
GGACGACGTGTGCGTGAGGGAGGTGACCGGCGACAGGATGCTGCCCACGGCGCTGGTGAGCGCATTCCACCGCGGCGACG
CGAACGCCAAGCAGGCGGCCGAGAGCATCCTCAGGAGGCTGCACAAGATGCCTGACTACTCTGCAACCTACATGTCCGTG
GAATTCTAGTGCTTTCATTTCATCGAGTAAATAAATATATACCACCGGTAAATAGCAGCAGATATTTGCTGCCGTGCATA
TATGAACATGATGTTTCATACATCATCTTGTACATCCGGTCGCAAAATTTATCTCAGTAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis