Browse Element(s) Details


OsAffx.24095.1.A1_at

Description tigr:9633.m02247
TID=OsAffx.24095.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2504011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25000NANA5+14389780..14391056hypothetical protein
LOC_Os05g25010Os.10827.1.S1_x_at10/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010Os.46055.2.S1_x_at5/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.2.S1_x_at3/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.3.S1_x_at2/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.1.S1_at2/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.3.S1_at1/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.1.S1_s_at9/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.7.S1_s_at8/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.2.S1_x_at6/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.5.S1_x_at2/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25040Os.28539.1.S1_at11/115+14411311..14416247expressed protein
LOC_Os05g25040OsAffx.24095.1.A1_at11/115+14411311..14416247expressed protein
LOC_Os05g25040Os.10623.1.S1_x_at1/115+14411311..14416247expressed protein
LOC_Os05g25040OsAffx.3012.1.S1_at1/115+14411311..14416247expressed protein
LOC_Os05g25040Os.51711.1.S1_at1/115+14411311..14416247expressed protein
LOC_Os05g25030NANA5+14415880..14416254hypothetical protein
LOC_Os05g25050OsAffx.4421.1.S1_at11/115+14417561..14419035hypothetical protein
LOC_Os05g25050OsAffx.28941.1.S1_x_at1/115+14417561..14419035hypothetical protein
LOC_Os05g25060OsAffx.14819.1.S1_at11/115+14422340..14428742expressed protein
LOC_Os05g25070Os.8036.1.S1_at4/115+14432264..14436147expressed protein
LOC_Os05g25070OsAffx.15286.1.S1_at2/115+14432264..14436147expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24095.1.A1_at--1032--4452Chr02:1928724..1928748 (25 bp)
GCCTCTCCGCCGCTCAAGTTCTTGC
NONE
OsAffx.24095.1.A1_at--983--9332Chr02:1928727..1928751 (25 bp)
TCTCCGCCGCTCAAGTTCTTGCCGC
NONE
OsAffx.24095.1.A1_at--952--4172Chr02:1928819..1928843 (25 bp)
CCCTTGTCTCCTCTCAGTGCTGGTT
NONE
OsAffx.24095.1.A1_at--1109--4312Chr02:1928820..1928844 (25 bp)
CCTTGTCTCCTCTCAGTGCTGGTTC
NONE
OsAffx.24095.1.A1_at--890--3612Chr02:1928821..1928845 (25 bp)
CTTGTCTCCTCTCAGTGCTGGTTCC
NONE
OsAffx.24095.1.A1_at--810--10812Chr02:1928822..1928846 (25 bp)
TTGTCTCCTCTCAGTGCTGGTTCCA
NONE
OsAffx.24095.1.A1_at--592--8712Chr02:1928823..1928847 (25 bp)
TGTCTCCTCTCAGTGCTGGTTCCAT
NONE
OsAffx.24095.1.A1_at--156--13Chr02:1928849..1928873 (25 bp)
CCCCTTAAGTTCAGTCGATTTCATG
NONE
OsAffx.24095.1.A1_at--280--4193Chr02:1928850..1928874 (25 bp)
CCCTTAAGTTCAGTCGATTTCATGC
NONE
OsAffx.24095.1.A1_at--434--4313Chr02:1928851..1928875 (25 bp)
CCTTAAGTTCAGTCGATTTCATGCA
NONE
OsAffx.24095.1.A1_at--310--10493Chr02:1928853..1928877 (25 bp)
TTAAGTTCAGTCGATTTCATGCAGT
NONE
Target Sequence 
GCCTCTCCGCCGCTCAAGTTCTTGCCGCCGGCCGCAAGGATGACNACCGTCGCCATCGCCGNTTGAGCCGCGGTTGTCTC
GATNTCTTGTTCGTTCCCTTGTCTCCTCTCAGTGCTGGTTCCATNCCCCTTAAGTTCAGTCGATTTCATGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24095.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis