Browse Element(s) Details


Os.10623.1.S1_x_at

Description gb:AU057255
DB_XREF= gi:4716139
DB_XREF=AU057255
CLONE=S21278_1A
TID=Os.10623.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10623 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g250401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25000NANA5+14389780..14391056hypothetical protein
LOC_Os05g25010Os.10827.1.S1_x_at10/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010Os.46055.2.S1_x_at5/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.2.S1_x_at3/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.3.S1_x_at2/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.1.S1_at2/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.3.S1_at1/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.1.S1_s_at9/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.7.S1_s_at8/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.2.S1_x_at6/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.5.S1_x_at2/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25040Os.28539.1.S1_at11/115+14411311..14416247expressed protein
LOC_Os05g25040OsAffx.24095.1.A1_at11/115+14411311..14416247expressed protein
LOC_Os05g25040Os.10623.1.S1_x_at1/115+14411311..14416247expressed protein
LOC_Os05g25040OsAffx.3012.1.S1_at1/115+14411311..14416247expressed protein
LOC_Os05g25040Os.51711.1.S1_at1/115+14411311..14416247expressed protein
LOC_Os05g25030NANA5+14415880..14416254hypothetical protein
LOC_Os05g25050OsAffx.4421.1.S1_at11/115+14417561..14419035hypothetical protein
LOC_Os05g25050OsAffx.28941.1.S1_x_at1/115+14417561..14419035hypothetical protein
LOC_Os05g25060OsAffx.14819.1.S1_at11/115+14422340..14428742expressed protein
LOC_Os05g25070Os.8036.1.S1_at4/115+14432264..14436147expressed protein
LOC_Os05g25070OsAffx.15286.1.S1_at2/115+14432264..14436147expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10623.1.S1_x_at--273--10731Chr08:7361077..7361101 (25 bp)
TTGCATGCACCGTACTAGTGACTCC
NONE
Os.10623.1.S1_x_at--826--9051Chr08:7361076..7361100 (25 bp)
TGCATGCACCGTACTAGTGACTCCC
NONE
Os.10623.1.S1_x_at--799--651Chr08:7361073..7361097 (25 bp)
ATGCACCGTACTAGTGACTCCCCTT
NONE
Os.10623.1.S1_x_at--525--6971Chr08:7361066..7361090 (25 bp)
GTACTAGTGACTCCCCTTACAGATC
NONE
Os.10623.1.S1_x_at--700--7374Chr03:19697912..19697936 (25 bp)
GTGACTCCCCTTACAGATCGAGCAG
NONE
Os.10623.1.S1_x_at--405--3851Chr08:7360977..7361001 (25 bp)
CTGCAGACATCCCTAGCCTTGTCTA
NONE
Os.10623.1.S1_x_at--283--7271Chr08:7357490..7357514 (25 bp)
GTCCTTTTCTTCTTAAATGTGTCTG
NONE
Os.10623.1.S1_x_at--128--10391Chr08:7357486..7357510 (25 bp)
TTTTCTTCTTAAATGTGTCTGCTAT
NONE
Os.10623.1.S1_x_at--772--7454Chr08:16353804..16353823 (20 bp)
GTGTCTGCTATGTATGTCCATGCTT
NONE
Os.10623.1.S1_x_at--90--38510Chr10:11113767..11113790 (24 bp)
CTGCTATGTATGTCCATGCTTAAGA
NONE
Os.10623.1.S1_x_at--383--6951Chr08:7357370..7357394 (25 bp)
GTAGATCTTTAACTATTTTTGTCAA
NONE
Target Sequence 
TTGCATGCACCGTACTAGTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATGCCGCCATGGA
GNTTCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGATGATTGCTTAAACGGTAAAGAAGTGA
TTTAGATGCTGACATTTTCCTGATTCAAGGTTTTAGATTTAGTCTTTGANGTGATGCGGGTAATCGANTGCTTCTTCTAN
GGANTTGGAANTTAATGGGGGTAAANCCCTANTCGGTGTGCTTGTGGTTTGGGTANACAAGNTTCCGTTGNTCNTCTTAT
ANANCNTATTTGGCCGGTNNGCCTANGNTAACTATTAANTTGATTTAAGTCTTTAAGTTNTTTTCTTCAAGTTGATGTAA
GTCTNTAAGTCCTTTTCTTCTTAAATGTGTCTGCTATGTATGTCCATGCTTAAGATGAAAGTGTGAATCTAGTGTATATC
CTGGGAACTAGATTCACATGAGTATGAGTTAAGAATATTTGAGATGTTGTAGATCTTTAACTATTTTTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10623.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis