Browse Element(s) Details


Os.51711.1.S1_at

Description gb:AK063499.1
DB_XREF= gi:32973517
TID=Os.51711.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-E02, full insert sequence.
FL= gb:AK063499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g248041/11expressed protein
LOC_Os05g250401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24770NANA4+14203194..14203595hypothetical protein
LOC_Os04g24780NANA4+14209984..14212418retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24790OsAffx.26219.1.S1_x_at11/114+14214918..14215547MADS-box family protein, putative
LOC_Os04g24790OsAffx.26219.1.S1_at11/114+14214918..14215547MADS-box family protein, putative
LOC_Os04g24800OsAffx.26219.1.S1_x_at11/114+14218916..14219545MADS-box family protein, putative
LOC_Os04g24800OsAffx.26219.1.S1_at11/114+14218916..14219545MADS-box family protein, putative
LOC_Os04g24804Os.51711.1.S1_at1/114+14224120..14228330expressed protein
LOC_Os04g24804Os.31845.2.S1_x_at1/114+14224120..14228330expressed protein
LOC_Os04g24810OsAffx.26219.1.S1_at7/114+14234445..14235074MADS-box family protein, putative
LOC_Os04g24810OsAffx.26219.1.S1_x_at6/114+14234445..14235074MADS-box family protein, putative
LOC_Os04g24820OsAffx.13963.1.S1_at11/114+14239849..14241465F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51711.1.S1_at--539--5992Chr03:20263151..20263176 (24 bp)
GAGAGAAACCTAGAACTTGTAAAAT
NONE
Os.51711.1.S1_at--310--5473Chr03:20263225..20263481 (25 bp)
GAACTCACTAGATTATGAACTTTAA
NONE
Os.51711.1.S1_at--102--63717Chr12:20083911..20083935 (25 bp)
GATCCACCAACATGTTCTCTAAAAA
NONE
Os.51711.1.S1_at--295--25114Chr10:11111107..11111131 (25 bp)
AACATATACACACTTTACATCAAAT
NONE
Os.51711.1.S1_at--464--7051Chr01:16867685..16867709 (25 bp)
GTAAACACAAGTTCTATAGCATCAT
NONE
Os.51711.1.S1_at--89--9611Chr01:16867664..16867688 (25 bp)
TCATAGAGCTATGCACTTCAATGTT
NONE
Os.51711.1.S1_at--721--6992Chr09:2953608..2953631 (24 bp)
GTACGAGTTCATCCATAATTCTGCA
NONE
Os.51711.1.S1_at--54--9751Chr01:16867605..16867629 (25 bp)
TAATTCTGCAATCCTTCGCGTGGGA
NONE
Os.51711.1.S1_at--538--3311Chr01:16867578..16867602 (25 bp)
CACCTGGTCATCTGGCCCAAAGAAA
NONE
Os.51711.1.S1_at--649--2751Chr01:16867559..16867583 (25 bp)
AAGAAACAGCACCATATCTCGCGCA
NONE
Os.51711.1.S1_at--465--1511Chr01:16867552..16867576 (25 bp)
AGCACCATATCTCGCGCACGAAAAA
NONE
Target Sequence 
GAGAGAAACCTAGAACTTGTAAAATCCATATAAAATCAAATAAAGCTTATTTTGAGATGATTCAAATTTCTTTGAACTCA
CTAGATTATGAACTTTAAAGTTATGAAATAAAAACTTGCACTCACAGTACAAATTTAGCCTCTAAAATTCATCTAAGATA
AATCATACATAAAGCATATACAAATTTATAAAATGCATACAAAATACATTTCAACTCATTTTAGAGCAAACTTAGTTTCT
AAAGATCCACCAACATGTTCTCTAAAAACAAAGTGAAATAAAACATATACACACTTTACATCAAATGCCTCTAAAACTAT
TACCTTTAAAATGACTAGTTTTAGATTAGCTGAACTTTAGAAGTTTATATAAAATTCATCTCAGATCCTTTTTGAGTAAA
CACAAGTTCTATAGCATCATAGAGCTATGCACTTCAATGTTATGTATATTAATATAAAAAGTACGAGTTCATCCATAATT
CTGCAATCCTTCGCGTGGGACCCACCTGGTCATCTGGCCCAAAGAAACAGCACCATATCTCGCGCACGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis